Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q85

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q85 entry

There are 12 chains in PDB entry 9Q85 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	LEU 1385
B	G -10	U 18
C	A 4	U 72
D	T 7	C 49
E	G 1	A 43
F	ALA 2	MET 289
G	ALA 2	MET 289
I	GLU 101	TYR 110
O	MET 1	ASN 218
L	MET 1	ASN 219
N	THR 18	PRO 197
M	LEU 16	PRO 197

There are108 helices in PDB entry 9Q85. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	94	Right-handed alpha
Helix 2	AA2	A	96	103	Right-handed alpha
Helix 3	AA3	A	121	132	Right-handed alpha
Helix 4	AA4	A	134	144	Right-handed alpha
Helix 5	AA5	A	150	164	Right-handed alpha
Helix 6	AA6	A	180	195	Right-handed alpha
Helix 7	AA7	A	206	214	Right-handed alpha
Helix 8	AA8	A	217	228	Right-handed alpha
Helix 9	AA9	A	236	247	Right-handed alpha
Helix 10	AB1	A	270	283	Right-handed alpha
Helix 11	AB2	A	286	304	Right-handed alpha
Helix 12	AB3	A	315	343	Right-handed alpha
Helix 13	AB4	A	344	351	Right-handed alpha
Helix 14	AB5	A	358	364	Right-handed alpha
Helix 15	AB6	A	368	381	Right-handed alpha
Helix 16	AB7	A	386	395	Right-handed alpha
Helix 17	AB8	A	404	409	Right-handed 310
Helix 18	AB9	A	411	426	Right-handed alpha
Helix 19	AC1	A	430	446	Right-handed alpha
Helix 20	AC2	A	483	496	Right-handed alpha
Helix 21	AC3	A	512	526	Right-handed alpha
Helix 22	AC4	A	541	556	Right-handed alpha
Helix 23	AC5	A	560	572	Right-handed alpha
Helix 24	AC6	A	590	601	Right-handed alpha
Helix 25	AC7	A	602	608	Right-handed alpha
Helix 26	AC8	A	611	625	Right-handed alpha
Helix 27	AC9	A	627	636	Right-handed alpha
Helix 28	AD1	A	637	639	Right-handed 310
Helix 29	AD2	A	643	652	Right-handed alpha
Helix 30	AD3	A	663	668	Right-handed alpha
Helix 31	AD4	A	677	684	Right-handed alpha
Helix 32	AD5	A	691	697	Right-handed alpha
Helix 33	AD6	A	702	719	Right-handed alpha
Helix 34	AD7	A	720	727	Right-handed alpha
Helix 35	AD8	A	731	752	Right-handed alpha
Helix 36	AD9	A	778	793	Right-handed alpha
Helix 37	AE1	A	809	814	Right-handed alpha
Helix 38	AE2	A	815	824	Right-handed alpha
Helix 39	AE3	A	858	860	Right-handed 310
Helix 40	AE4	A	867	872	Right-handed 310
Helix 41	AE5	A	879	896	Right-handed alpha
Helix 42	AE6	A	900	909	Right-handed alpha
Helix 43	AE7	A	916	929	Right-handed alpha
Helix 44	AE8	A	932	947	Right-handed alpha
Helix 45	AE9	A	966	978	Right-handed alpha
Helix 46	AF1	A	987	1008	Right-handed alpha
Helix 47	AF2	A	1011	1016	Right-handed alpha
Helix 48	AF3	A	1024	1033	Right-handed alpha
Helix 49	AF4	A	1041	1046	Right-handed 310
Helix 50	AF5	A	1076	1088	Right-handed alpha
Helix 51	AF6	A	1138	1143	Right-handed alpha
Helix 52	AF7	A	1181	1188	Right-handed alpha
Helix 53	AF8	A	1188	1195	Right-handed alpha
Helix 54	AF9	A	1245	1257	Right-handed alpha
Helix 55	AG1	A	1264	1273	Right-handed alpha
Helix 56	AG2	A	1275	1291	Right-handed alpha
Helix 57	AG3	A	1295	1306	Right-handed alpha
Helix 58	AG4	A	1312	1321	Right-handed alpha
Helix 59	AG5	A	1357	1362	Right-handed 310
Helix 60	AG6	F	52	61	Right-handed alpha
Helix 61	AG7	F	86	96	Right-handed alpha
Helix 62	AG8	F	98	123	Right-handed alpha
Helix 63	AG9	F	126	139	Right-handed alpha
Helix 64	AH1	F	147	162	Right-handed alpha
Helix 65	AH2	F	171	195	Right-handed alpha
Helix 66	AH3	F	212	220	Right-handed alpha
Helix 67	AH4	F	223	233	Right-handed alpha
Helix 68	AH5	F	237	246	Right-handed alpha
Helix 69	AH6	F	247	250	Right-handed 310
Helix 70	AH7	F	262	279	Right-handed alpha
Helix 71	AH8	G	52	61	Right-handed alpha
Helix 72	AH9	G	87	96	Right-handed alpha
Helix 73	AI1	G	98	124	Right-handed alpha
Helix 74	AI2	G	126	139	Right-handed alpha
Helix 75	AI3	G	147	161	Right-handed alpha
Helix 76	AI4	G	171	195	Right-handed alpha
Helix 77	AI5	G	212	220	Right-handed alpha
Helix 78	AI6	G	222	233	Right-handed alpha
Helix 79	AI7	G	237	246	Right-handed alpha
Helix 80	AI8	G	247	249	Right-handed 310
Helix 81	AI9	G	262	280	Right-handed alpha
Helix 82	AJ1	O	24	37	Right-handed alpha
Helix 83	AJ2	O	55	57	Right-handed 310
Helix 84	AJ3	O	72	89	Right-handed alpha
Helix 85	AJ4	O	90	115	Right-handed alpha
Helix 86	AJ5	O	125	133	Right-handed alpha
Helix 87	AJ6	O	143	158	Right-handed alpha
Helix 88	AJ7	O	174	188	Right-handed alpha
Helix 89	AJ8	L	24	37	Right-handed alpha
Helix 90	AJ9	L	72	90	Right-handed alpha
Helix 91	AK1	L	90	114	Right-handed alpha
Helix 92	AK2	L	125	134	Right-handed alpha
Helix 93	AK3	L	143	158	Right-handed alpha
Helix 94	AK4	L	169	173	Right-handed 310
Helix 95	AK5	L	174	188	Right-handed alpha
Helix 96	AK6	N	24	37	Right-handed alpha
Helix 97	AK7	N	72	90	Right-handed alpha
Helix 98	AK8	N	90	115	Right-handed alpha
Helix 99	AK9	N	125	133	Right-handed alpha
Helix 100	AL1	N	143	158	Right-handed alpha
Helix 101	AL2	N	169	173	Right-handed 310
Helix 102	AL3	N	174	189	Right-handed alpha
Helix 103	AL4	M	24	37	Right-handed alpha
Helix 104	AL5	M	72	90	Right-handed alpha
Helix 105	AL6	M	90	115	Right-handed alpha
Helix 106	AL7	M	125	133	Right-handed alpha
Helix 107	AL8	M	143	158	Right-handed alpha
Helix 108	AL9	M	174	189	Right-handed alpha

There are 25 sheets in PDB entry 9Q85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	961	964	first strand
Strand 2	A	759	762	parallel
Strand 3	A	6	11	parallel
Strand 4	A	15	21	anti-parallel
Strand 5	A	49	52	anti-parallel
Strand 6	A	1093	1096	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	33	first strand
Strand 2	A	42	46	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	509	first strand
Strand 2	A	658	662	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	539	first strand
Strand 2	A	528	530	anti-parallel
Strand 3	A	578	580	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	844	847	first strand
Strand 2	A	862	865	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1049	1051	first strand
Strand 2	A	1057	1059	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1063	1065	first strand
Strand 2	A	1072	1075	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1104	1106	first strand
Strand 2	A	1109	1111	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1131	1132	first strand
Strand 2	A	1144	1145	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1167	1178	first strand
Strand 2	A	1150	1162	anti-parallel
Strand 3	A	1198	1207	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1234	1238	first strand
Strand 2	A	1220	1226	anti-parallel
Strand 3	A	1211	1215	anti-parallel
Strand 4	A	1365	1370	anti-parallel
Strand 5	A	1377	1381	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1343	1345	first strand
Strand 2	A	1348	1350	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	66	first strand
Strand 2	F	38	43	parallel
Strand 3	F	5	9	parallel
Strand 4	I	103	106	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	17	first strand
Strand 2	F	21	25	anti-parallel
Strand 3	F	30	34	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	51	first strand
Strand 2	G	49	51	anti-parallel
Strand 3	G	13	18	parallel
Strand 4	G	21	26	anti-parallel
Strand 5	G	31	34	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	80	first strand
Strand 2	G	74	80	anti-parallel
Strand 3	G	64	68	anti-parallel
Strand 4	G	38	43	parallel
Strand 5	G	5	9	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	252	253	first strand
Strand 2	F	260	261	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	252	255	first strand
Strand 2	G	258	261	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	12	13	first strand
Strand 2	O	2	4	anti-parallel
Strand 3	O	45	46	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	59	62	first strand
Strand 2	O	163	167	parallel
Strand 3	O	192	196	parallel
Strand 4	O	18	22	parallel
Strand 5	O	205	208	parallel
Strand 6	O	214	217	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	13	first strand
Strand 2	L	2	4	anti-parallel
Strand 3	L	45	47	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	59	62	first strand
Strand 2	L	163	167	parallel
Strand 3	L	192	196	parallel
Strand 4	L	18	22	parallel
Strand 5	L	204	208	parallel
Strand 6	L	214	218	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	120	first strand
Strand 2	N	136	137	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	21	first strand
Strand 2	N	192	196	parallel
Strand 3	N	163	167	parallel
Strand 4	N	59	62	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	18	21	first strand
Strand 2	M	192	196	parallel
Strand 3	M	163	167	parallel
Strand 4	M	59	62	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q85

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q85