Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q8I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q8I entry

There are 13 chains in PDB entry 9Q8I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	PRO 127
B	MET 1	ILE 220
C	ALA 6	ARG 596
E	ALA 11	LYS 166
F	ALA 1	LYS 442
G	MET 1	GLN 907
H	MET 1	ALA 324
I	MET 32	PRO 180
J	MET 1	ALA 176
K	MET 1	GLY 100
L	MET 1	ARG 613
M	MET 1	THR 505
N	MET 1	MET 485

There are224 helices in PDB entry 9Q8I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	37	Right-handed alpha
Helix 2	AA2	A	66	90	Right-handed alpha
Helix 3	AA3	A	91	120	Right-handed alpha
Helix 4	AA4	B	36	52	Right-handed alpha
Helix 5	AA5	B	63	73	Right-handed alpha
Helix 6	AA6	B	89	93	Right-handed 310
Helix 7	AA7	B	106	115	Right-handed alpha
Helix 8	AA8	B	127	133	Right-handed alpha
Helix 9	AA9	B	144	148	Right-handed 310
Helix 10	AB1	B	161	177	Right-handed alpha
Helix 11	AB2	B	199	204	Right-handed alpha
Helix 12	AB3	B	204	211	Right-handed alpha
Helix 13	AB4	C	19	30	Right-handed alpha
Helix 14	AB5	C	52	62	Right-handed alpha
Helix 15	AB6	C	129	142	Right-handed alpha
Helix 16	AB7	C	177	190	Right-handed alpha
Helix 17	AB8	C	196	201	Right-handed 310
Helix 18	AB9	C	251	256	Right-handed alpha
Helix 19	AC1	C	264	269	Right-handed alpha
Helix 20	AC2	C	275	279	Right-handed 310
Helix 21	AC3	C	280	292	Right-handed alpha
Helix 22	AC4	C	296	327	Right-handed alpha
Helix 23	AC5	C	334	351	Right-handed alpha
Helix 24	AC6	C	371	380	Right-handed alpha
Helix 25	AC7	C	382	397	Right-handed alpha
Helix 26	AC8	C	397	405	Right-handed alpha
Helix 27	AC9	C	411	418	Right-handed alpha
Helix 28	AD1	C	422	428	Right-handed alpha
Helix 29	AD2	C	433	438	Right-handed alpha
Helix 30	AD3	C	442	446	Right-handed 310
Helix 31	AD4	C	458	483	Right-handed alpha
Helix 32	AD5	C	500	507	Right-handed alpha
Helix 33	AD6	C	507	519	Right-handed alpha
Helix 34	AD7	C	559	565	Right-handed alpha
Helix 35	AD8	C	567	573	Right-handed alpha
Helix 36	AD9	C	576	587	Right-handed alpha
Helix 37	AE1	C	590	596	Right-handed alpha
Helix 38	AE2	E	15	27	Right-handed alpha
Helix 39	AE3	E	31	34	Right-handed 310
Helix 40	AE4	E	35	48	Right-handed alpha
Helix 41	AE5	E	51	63	Right-handed alpha
Helix 42	AE6	E	65	76	Right-handed alpha
Helix 43	AE7	E	94	101	Right-handed alpha
Helix 44	AE8	E	101	114	Right-handed alpha
Helix 45	AE9	E	136	140	Right-handed 310
Helix 46	AF1	E	154	156	Right-handed 310
Helix 47	AF2	E	157	164	Right-handed alpha
Helix 48	AF3	F	25	32	Right-handed alpha
Helix 49	AF4	F	35	43	Right-handed alpha
Helix 50	AF5	F	46	58	Right-handed alpha
Helix 51	AF6	F	68	75	Right-handed alpha
Helix 52	AF7	F	99	108	Right-handed alpha
Helix 53	AF8	F	108	124	Right-handed alpha
Helix 54	AF9	F	136	154	Right-handed alpha
Helix 55	AG1	F	161	163	Right-handed 310
Helix 56	AG2	F	178	181	Right-handed 310
Helix 57	AG3	F	182	191	Right-handed alpha
Helix 58	AG4	F	208	212	Right-handed 310
Helix 59	AG5	F	219	224	Right-handed alpha
Helix 60	AG6	F	224	232	Right-handed alpha
Helix 61	AG7	F	232	238	Right-handed alpha
Helix 62	AG8	F	269	277	Right-handed alpha
Helix 63	AG9	F	301	307	Right-handed 310
Helix 64	AH1	F	310	318	Right-handed alpha
Helix 65	AH2	F	334	349	Right-handed alpha
Helix 66	AH3	F	354	373	Right-handed alpha
Helix 67	AH4	F	379	391	Right-handed alpha
Helix 68	AH5	F	399	415	Right-handed alpha
Helix 69	AH6	F	415	423	Right-handed alpha
Helix 70	AH7	G	18	26	Right-handed alpha
Helix 71	AH8	G	81	98	Right-handed alpha
Helix 72	AH9	G	112	121	Right-handed alpha
Helix 73	AI1	G	148	151	Right-handed 310
Helix 74	AI2	G	155	164	Right-handed alpha
Helix 75	AI3	G	175	179	Right-handed 310
Helix 76	AI4	G	193	195	Right-handed 310
Helix 77	AI5	G	196	201	Right-handed alpha
Helix 78	AI6	G	209	213	Right-handed alpha
Helix 79	AI7	G	217	221	Right-handed 310
Helix 80	AI8	G	263	269	Right-handed alpha
Helix 81	AI9	G	270	275	Right-handed 310
Helix 82	AJ1	G	294	308	Right-handed alpha
Helix 83	AJ2	G	321	333	Right-handed alpha
Helix 84	AJ3	G	342	359	Right-handed alpha
Helix 85	AJ4	G	366	372	Right-handed 310
Helix 86	AJ5	G	381	386	Right-handed alpha
Helix 87	AJ6	G	386	398	Right-handed alpha
Helix 88	AJ7	G	398	408	Right-handed alpha
Helix 89	AJ8	G	414	423	Right-handed alpha
Helix 90	AJ9	G	437	442	Right-handed 310
Helix 91	AK1	G	450	466	Right-handed alpha
Helix 92	AK2	G	476	493	Right-handed alpha
Helix 93	AK3	G	506	523	Right-handed alpha
Helix 94	AK4	G	537	545	Right-handed alpha
Helix 95	AK5	G	548	559	Right-handed alpha
Helix 96	AK6	G	576	586	Right-handed alpha
Helix 97	AK7	G	599	604	Right-handed 310
Helix 98	AK8	G	612	616	Right-handed 310
Helix 99	AK9	G	647	662	Right-handed alpha
Helix 100	AL1	G	668	680	Right-handed alpha
Helix 101	AL2	G	684	689	Right-handed 310
Helix 102	AL3	G	761	769	Right-handed 310
Helix 103	AL4	G	822	828	Right-handed alpha
Helix 104	AL5	G	830	835	Right-handed alpha
Helix 105	AL6	G	843	850	Right-handed alpha
Helix 106	AL7	G	892	896	Right-handed 310
Helix 107	AL8	H	5	44	Right-handed alpha
Helix 108	AL9	H	53	57	Right-handed 310
Helix 109	AM1	H	58	69	Right-handed alpha
Helix 110	AM2	H	79	92	Right-handed alpha
Helix 111	AM3	H	93	98	Right-handed alpha
Helix 112	AM4	H	99	101	Right-handed 310
Helix 113	AM5	H	115	138	Right-handed alpha
Helix 114	AM6	H	139	158	Right-handed alpha
Helix 115	AM7	H	159	164	Right-handed alpha
Helix 116	AM8	H	164	172	Right-handed alpha
Helix 117	AM9	H	175	182	Right-handed alpha
Helix 118	AN1	H	192	207	Right-handed alpha
Helix 119	AN2	H	231	257	Right-handed alpha
Helix 120	AN3	H	266	288	Right-handed alpha
Helix 121	AN4	H	293	304	Right-handed alpha
Helix 122	AN5	H	304	324	Right-handed alpha
Helix 123	AN6	I	64	70	Right-handed alpha
Helix 124	AN7	I	103	109	Right-handed alpha
Helix 125	AN8	I	126	129	Right-handed 310
Helix 126	AN9	I	133	137	Right-handed 310
Helix 127	AO1	I	149	153	Right-handed 310
Helix 128	AO2	J	2	22	Right-handed alpha
Helix 129	AO3	J	24	46	Right-handed alpha
Helix 130	AO4	J	48	58	Right-handed alpha
Helix 131	AO5	J	62	74	Right-handed alpha
Helix 132	AO6	J	79	85	Right-handed alpha
Helix 133	AO7	J	86	88	Right-handed 310
Helix 134	AO8	J	89	113	Right-handed alpha
Helix 135	AO9	J	125	134	Right-handed alpha
Helix 136	AP1	J	137	160	Right-handed alpha
Helix 137	AP2	J	171	175	Right-handed 310
Helix 138	AP3	K	3	25	Right-handed alpha
Helix 139	AP4	K	27	54	Right-handed alpha
Helix 140	AP5	K	56	88	Right-handed alpha
Helix 141	AP6	K	91	95	Right-handed 310
Helix 142	AP7	L	5	22	Right-handed alpha
Helix 143	AP8	L	26	55	Right-handed alpha
Helix 144	AP9	L	83	107	Right-handed alpha
Helix 145	AQ1	L	112	133	Right-handed alpha
Helix 146	AQ2	L	135	155	Right-handed alpha
Helix 147	AQ3	L	160	193	Right-handed alpha
Helix 148	AQ4	L	196	208	Right-handed alpha
Helix 149	AQ5	L	212	230	Right-handed alpha
Helix 150	AQ6	L	240	245	Right-handed 310
Helix 151	AQ7	L	246	254	Right-handed alpha
Helix 152	AQ8	L	260	269	Right-handed alpha
Helix 153	AQ9	L	269	274	Right-handed alpha
Helix 154	AR1	L	276	300	Right-handed alpha
Helix 155	AR2	L	303	325	Right-handed alpha
Helix 156	AR3	L	327	356	Right-handed alpha
Helix 157	AR4	L	367	372	Right-handed alpha
Helix 158	AR5	L	372	387	Right-handed alpha
Helix 159	AR6	L	393	409	Right-handed alpha
Helix 160	AR7	L	411	437	Right-handed alpha
Helix 161	AR8	L	453	464	Right-handed alpha
Helix 162	AR9	L	465	471	Right-handed 310
Helix 163	AS1	L	486	513	Right-handed alpha
Helix 164	AS2	L	516	525	Right-handed alpha
Helix 165	AS3	L	525	537	Right-handed alpha
Helix 166	AS4	L	540	549	Right-handed alpha
Helix 167	AS5	L	549	561	Right-handed alpha
Helix 168	AS6	L	563	569	Right-handed alpha
Helix 169	AS7	L	570	584	Right-handed alpha
Helix 170	AS8	L	585	587	Right-handed 310
Helix 171	AS9	L	590	612	Right-handed alpha
Helix 172	AT1	M	2	20	Right-handed alpha
Helix 173	AT2	M	21	24	Right-handed 310
Helix 174	AT3	M	27	48	Right-handed alpha
Helix 175	AT4	M	49	50	Right-handed 310
Helix 176	AT5	M	51	55	Right-handed 310
Helix 177	AT6	M	73	76	Right-handed 310
Helix 178	AT7	M	84	105	Right-handed alpha
Helix 179	AT8	M	112	133	Right-handed alpha
Helix 180	AT9	M	135	146	Right-handed alpha
Helix 181	AU1	M	146	157	Right-handed alpha
Helix 182	AU2	M	163	200	Right-handed alpha
Helix 183	AU3	M	206	211	Right-handed alpha
Helix 184	AU4	M	216	235	Right-handed alpha
Helix 185	AU5	M	242	251	Right-handed alpha
Helix 186	AU6	M	255	263	Right-handed alpha
Helix 187	AU7	M	265	274	Right-handed alpha
Helix 188	AU8	M	274	279	Right-handed alpha
Helix 189	AU9	M	279	307	Right-handed alpha
Helix 190	AV1	M	310	331	Right-handed alpha
Helix 191	AV2	M	334	367	Right-handed alpha
Helix 192	AV3	M	370	374	Right-handed 310
Helix 193	AV4	M	376	380	Right-handed 310
Helix 194	AV5	M	383	396	Right-handed alpha
Helix 195	AV6	M	402	418	Right-handed alpha
Helix 196	AV7	M	418	427	Right-handed alpha
Helix 197	AV8	M	427	444	Right-handed alpha
Helix 198	AV9	M	451	455	Right-handed 310
Helix 199	AW1	M	461	481	Right-handed alpha
Helix 200	AW2	M	482	505	Right-handed alpha
Helix 201	AW3	N	4	10	Right-handed alpha
Helix 202	AW4	N	11	31	Right-handed alpha
Helix 203	AW5	N	33	59	Right-handed alpha
Helix 204	AW6	N	70	96	Right-handed alpha
Helix 205	AW7	N	102	122	Right-handed alpha
Helix 206	AW8	N	124	144	Right-handed alpha
Helix 207	AW9	N	149	182	Right-handed alpha
Helix 208	AX1	N	185	189	Right-handed 310
Helix 209	AX2	N	200	218	Right-handed alpha
Helix 210	AX3	N	226	234	Right-handed alpha
Helix 211	AX4	N	235	244	Right-handed alpha
Helix 212	AX5	N	244	261	Right-handed alpha
Helix 213	AX6	N	262	265	Right-handed 310
Helix 214	AX7	N	266	289	Right-handed alpha
Helix 215	AX8	N	293	315	Right-handed alpha
Helix 216	AX9	N	316	319	Right-handed 310
Helix 217	AY1	N	320	348	Right-handed alpha
Helix 218	AY2	N	358	363	Right-handed 310
Helix 219	AY3	N	364	368	Right-handed 310
Helix 220	AY4	N	369	385	Right-handed alpha
Helix 221	AY5	N	389	405	Right-handed alpha
Helix 222	AY6	N	407	432	Right-handed alpha
Helix 223	AY7	N	447	470	Right-handed alpha
Helix 224	AY8	N	471	481	Right-handed alpha

There are 26 sheets in PDB entry 9Q8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	J	167	169	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	2	5	anti-parallel
Strand 3	B	193	195	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	60	first strand
Strand 2	B	95	99	parallel
Strand 3	B	122	126	parallel
Strand 4	B	153	155	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	37	first strand
Strand 2	C	45	48	anti-parallel
Strand 3	C	105	113	parallel
Strand 4	C	92	100	anti-parallel
Strand 5	C	69	77	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	121	first strand
Strand 2	C	144	146	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	215	first strand
Strand 2	C	228	234	anti-parallel
Strand 3	C	237	244	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	360	first strand
Strand 2	C	363	364	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	527	534	first strand
Strand 2	C	539	546	anti-parallel
Strand 3	C	554	558	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	131	first strand
Strand 2	E	87	92	parallel
Strand 3	E	143	145	anti-parallel
Strand 4	E	148	150	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	160	first strand
Strand 2	F	165	173	anti-parallel
Strand 3	F	127	132	parallel
Strand 4	F	86	90	parallel
Strand 5	F	214	218	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	260	265	first strand
Strand 2	F	247	253	anti-parallel
Strand 3	F	325	330	parallel
Strand 4	F	287	291	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	13	first strand
Strand 2	G	2	6	anti-parallel
Strand 3	G	75	78	parallel
Strand 4	G	49	53	anti-parallel
Strand 5	G	62	65	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	144	146	first strand
Strand 2	G	206	208	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	171	173	first strand
Strand 2	G	180	182	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	222	223	first strand
Strand 2	G	236	242	anti-parallel
Strand 3	G	226	227	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	222	223	first strand
Strand 2	G	236	242	anti-parallel
Strand 3	G	245	251	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	289	292	first strand
Strand 2	G	283	286	anti-parallel
Strand 3	G	606	609	anti-parallel
Strand 4	G	589	594	parallel
Strand 5	G	563	567	parallel
Strand 6	G	312	315	parallel
Strand 7	G	337	338	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	445	448	first strand
Strand 2	G	429	433	parallel
Strand 3	G	374	378	parallel
Strand 4	G	496	501	parallel
Strand 5	G	528	532	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	618	621	first strand
Strand 2	G	626	630	anti-parallel
Strand 3	G	783	784	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	702	703	first strand
Strand 2	G	734	735	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	899	900	first strand
Strand 2	G	810	815	anti-parallel
Strand 3	G	881	885	parallel
Strand 4	G	840	842	anti-parallel
Strand 5	G	866	873	parallel
Strand 6	G	857	861	anti-parallel
Strand 7	G	904	905	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	48	50	first strand
Strand 2	I	114	116	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	75	81	first strand
Strand 2	I	87	95	anti-parallel
Strand 3	I	131	132	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	60	70	first strand
Strand 2	L	73	81	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	65	72	first strand
Strand 2	M	77	83	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	61	64	first strand
Strand 2	N	67	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q8I

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q8I