Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Q8J entry

There are 3 chains in PDB entry 9Q8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 64LYS 202
B
 SER 64LYS 202
C
 GLY 62LYS 202
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 9Q8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 96Right-handed alpha
Helix 2
AA2
A
98 100Right-handed 310
Helix 3
AA3
A
158 162Right-handed 310
Helix 4
AA4
B
97 100Right-handed 310
Helix 5
AA5
C
91 96Right-handed alpha
Helix 6
AA6
C
97 100Right-handed 310
Helix 7
AA7
C
158 162Right-handed 310
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There are 9 sheets in PDB entry 9Q8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 75first strand
Strand 2
A
186 201anti-parallel
Strand 3
A
102 115anti-parallel
Strand 4
A
152 156anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 75first strand
Strand 2
A
186 201anti-parallel
Strand 3
A
102 115anti-parallel
Strand 4
A
167 168anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 84first strand
Strand 2
A
174 180anti-parallel
Strand 3
A
125 131anti-parallel
Strand 4
A
145 147anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 75first strand
Strand 2
B
186 201anti-parallel
Strand 3
B
102 115anti-parallel
Strand 4
B
152 156anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 75first strand
Strand 2
B
186 201anti-parallel
Strand 3
B
102 115anti-parallel
Strand 4
B
167 168anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 84first strand
Strand 2
B
174 180anti-parallel
Strand 3
B
125 131anti-parallel
Strand 4
B
144 147anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 75first strand
Strand 2
C
186 201anti-parallel
Strand 3
C
102 116anti-parallel
Strand 4
C
152 156anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 75first strand
Strand 2
C
186 201anti-parallel
Strand 3
C
102 116anti-parallel
Strand 4
C
167 168anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 84first strand
Strand 2
C
174 180anti-parallel
Strand 3
C
125 131anti-parallel
Strand 4
C
145 147anti-parallel
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