Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Q8M entry

There are 4 chains in PDB entry 9Q8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 11GLN 469
B
 PHE 8GLU 300
C
 ASP 3ASP 152
E
 SER 451ARG 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 9Q8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 36Right-handed alpha
Helix 2
AA2
A
38 51Right-handed alpha
Helix 3
AA3
A
52 55Right-handed 310
Helix 4
AA4
A
59 87Right-handed alpha
Helix 5
AA5
A
93 98Right-handed alpha
Helix 6
AA6
A
99 101Right-handed 310
Helix 7
AA7
A
103 122Right-handed alpha
Helix 8
AA8
A
125 137Right-handed alpha
Helix 9
AA9
A
138 140Right-handed 310
Helix 10
AB1
A
142 157Right-handed alpha
Helix 11
AB2
A
175 197Right-handed alpha
Helix 12
AB3
A
198 200Right-handed 310
Helix 13
AB4
A
202 204Right-handed 310
Helix 14
AB5
A
205 216Right-handed alpha
Helix 15
AB6
A
216 229Right-handed alpha
Helix 16
AB7
A
234 241Right-handed alpha
Helix 17
AB8
A
241 253Right-handed alpha
Helix 18
AB9
A
255 270Right-handed alpha
Helix 19
AC1
A
271 277Right-handed alpha
Helix 20
AC2
A
278 288Right-handed alpha
Helix 21
AC3
A
294 312Right-handed alpha
Helix 22
AC4
A
323 339Right-handed alpha
Helix 23
AC5
A
343 362Right-handed alpha
Helix 24
AC6
A
365 383Right-handed alpha
Helix 25
AC7
A
392 409Right-handed alpha
Helix 26
AC8
A
412 417Right-handed alpha
Helix 27
AC9
A
422 428Right-handed 310
Helix 28
AD1
A
429 447Right-handed alpha
Helix 29
AD2
A
453 469Right-handed alpha
Helix 30
AD3
B
32 34Right-handed 310
Helix 31
AD4
B
253 256Right-handed 310
Helix 32
AD5
C
18 24Right-handed alpha
Helix 33
AD6
C
72 86Right-handed alpha
Helix 34
AD7
C
98 102Right-handed 310
Helix 35
AD8
C
108 111Right-handed 310
Helix 36
AD9
C
112 133Right-handed alpha
Helix 37
AE1
C
134 137Right-handed 310
Helix 38
AE2
C
139 147Right-handed alpha
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There are 8 sheets in PDB entry 9Q8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 18first strand
Strand 2
B
48 56anti-parallel
Strand 3
B
105 111anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
36 42anti-parallel
Strand 3
B
143 151parallel
Strand 4
B
126 136anti-parallel
Strand 5
B
68 78anti-parallel
Strand 6
B
81 96anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
36 42anti-parallel
Strand 3
B
143 151parallel
Strand 4
B
126 136anti-parallel
Strand 5
B
121 122anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
99 101anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 168first strand
Strand 2
B
174 180anti-parallel
Strand 3
B
190 200anti-parallel
Strand 4
B
245 251anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 186first strand
Strand 2
B
285 295parallel
Strand 3
B
268 280anti-parallel
Strand 4
B
261 264anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 237first strand
Strand 2
B
204 219anti-parallel
Strand 3
B
268 280anti-parallel
Strand 4
B
285 295anti-parallel
Strand 5
E
452 454parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 39first strand
Strand 2
C
48 56anti-parallel
Strand 3
C
65 71anti-parallel
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