Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q8X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q8X entry

There are 14 chains in PDB entry 9Q8X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	GLY 34	TYR 534
L	ASN 6	LYS 543
G	ARG 11	PRO 117
H	ARG 26	ALA 121
E	HIS 39	ARG 134
B	VAL 21	PHE 100
C	LYS 13	LEU 116
D	ARG 26	LYS 122
M	GLY 34	TYR 534
N	ASN 6	LYS 545
A	PRO 38	GLU 133
F	ARG 23	PHE 100
I	T 2	A 152
J	C 3	G 151

There are100 helices in PDB entry 9Q8X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	58	77	Right-handed alpha
Helix 2	AA2	K	113	121	Right-handed alpha
Helix 3	AA3	K	123	132	Right-handed alpha
Helix 4	AA4	K	142	156	Right-handed alpha
Helix 5	AA5	K	182	196	Right-handed alpha
Helix 6	AA6	K	238	250	Right-handed alpha
Helix 7	AA7	K	330	339	Right-handed alpha
Helix 8	AA8	K	354	356	Right-handed 310
Helix 9	AA9	K	377	393	Right-handed alpha
Helix 10	AB1	K	457	469	Right-handed alpha
Helix 11	AB2	K	480	495	Right-handed alpha
Helix 12	AB3	K	510	519	Right-handed alpha
Helix 13	AB4	K	521	530	Right-handed alpha
Helix 14	AB5	L	17	22	Right-handed alpha
Helix 15	AB6	L	29	48	Right-handed alpha
Helix 16	AB7	L	87	96	Right-handed alpha
Helix 17	AB8	L	106	120	Right-handed alpha
Helix 18	AB9	L	146	157	Right-handed alpha
Helix 19	AC1	L	198	217	Right-handed alpha
Helix 20	AC2	L	218	223	Right-handed 310
Helix 21	AC3	L	227	233	Right-handed alpha
Helix 22	AC4	L	285	290	Right-handed alpha
Helix 23	AC5	L	324	332	Right-handed alpha
Helix 24	AC6	L	349	351	Right-handed 310
Helix 25	AC7	L	352	356	Right-handed 310
Helix 26	AC8	L	370	388	Right-handed alpha
Helix 27	AC9	L	441	445	Right-handed 310
Helix 28	AD1	L	448	461	Right-handed alpha
Helix 29	AD2	L	485	500	Right-handed alpha
Helix 30	AD3	L	509	517	Right-handed alpha
Helix 31	AD4	L	520	525	Right-handed alpha
Helix 32	AD5	L	527	536	Right-handed alpha
Helix 33	AD6	G	26	36	Right-handed alpha
Helix 34	AD7	G	45	73	Right-handed alpha
Helix 35	AD8	G	79	89	Right-handed alpha
Helix 36	AD9	G	90	97	Right-handed alpha
Helix 37	AE1	H	34	46	Right-handed alpha
Helix 38	AE2	H	52	81	Right-handed alpha
Helix 39	AE3	H	87	97	Right-handed alpha
Helix 40	AE4	H	102	121	Right-handed alpha
Helix 41	AE5	E	44	57	Right-handed alpha
Helix 42	AE6	E	63	76	Right-handed alpha
Helix 43	AE7	E	85	114	Right-handed alpha
Helix 44	AE8	E	120	132	Right-handed alpha
Helix 45	AE9	B	25	29	Right-handed 310
Helix 46	AF1	B	30	41	Right-handed alpha
Helix 47	AF2	B	49	76	Right-handed alpha
Helix 48	AF3	B	82	93	Right-handed alpha
Helix 49	AF4	C	16	21	Right-handed alpha
Helix 50	AF5	C	26	37	Right-handed alpha
Helix 51	AF6	C	45	72	Right-handed alpha
Helix 52	AF7	C	79	90	Right-handed alpha
Helix 53	AF8	C	90	97	Right-handed alpha
Helix 54	AF9	D	34	46	Right-handed alpha
Helix 55	AG1	D	52	80	Right-handed alpha
Helix 56	AG2	D	87	99	Right-handed alpha
Helix 57	AG3	D	101	122	Right-handed alpha
Helix 58	AG4	M	58	77	Right-handed alpha
Helix 59	AG5	M	112	120	Right-handed alpha
Helix 60	AG6	M	121	123	Right-handed 310
Helix 61	AG7	M	124	135	Right-handed alpha
Helix 62	AG8	M	142	157	Right-handed alpha
Helix 63	AG9	M	179	197	Right-handed alpha
Helix 64	AH1	M	238	251	Right-handed alpha
Helix 65	AH2	M	330	337	Right-handed alpha
Helix 66	AH3	M	354	356	Right-handed 310
Helix 67	AH4	M	377	393	Right-handed alpha
Helix 68	AH5	M	439	443	Right-handed 310
Helix 69	AH6	M	459	469	Right-handed alpha
Helix 70	AH7	M	480	495	Right-handed alpha
Helix 71	AH8	M	510	519	Right-handed alpha
Helix 72	AH9	M	519	527	Right-handed alpha
Helix 73	AI1	N	17	22	Right-handed alpha
Helix 74	AI2	N	29	48	Right-handed alpha
Helix 75	AI3	N	69	73	Right-handed 310
Helix 76	AI4	N	87	97	Right-handed alpha
Helix 77	AI5	N	106	121	Right-handed alpha
Helix 78	AI6	N	143	146	Right-handed 310
Helix 79	AI7	N	147	158	Right-handed alpha
Helix 80	AI8	N	198	214	Right-handed alpha
Helix 81	AI9	N	215	222	Right-handed 310
Helix 82	AJ1	N	228	232	Right-handed 310
Helix 83	AJ2	N	324	331	Right-handed alpha
Helix 84	AJ3	N	347	351	Right-handed 310
Helix 85	AJ4	N	352	356	Right-handed 310
Helix 86	AJ5	N	370	388	Right-handed alpha
Helix 87	AJ6	N	426	430	Right-handed 310
Helix 88	AJ7	N	447	461	Right-handed alpha
Helix 89	AJ8	N	484	500	Right-handed alpha
Helix 90	AJ9	N	509	517	Right-handed alpha
Helix 91	AK1	N	519	525	Right-handed alpha
Helix 92	AK2	N	526	536	Right-handed alpha
Helix 93	AK3	A	44	57	Right-handed alpha
Helix 94	AK4	A	63	78	Right-handed alpha
Helix 95	AK5	A	85	114	Right-handed alpha
Helix 96	AK6	A	120	132	Right-handed alpha
Helix 97	AK7	F	25	29	Right-handed 310
Helix 98	AK8	F	30	42	Right-handed alpha
Helix 99	AK9	F	49	76	Right-handed alpha
Helix 100	AL1	F	82	93	Right-handed alpha

There are 27 sheets in PDB entry 9Q8X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	102	109	first strand
Strand 2	K	82	88	anti-parallel
Strand 3	K	37	43	parallel
Strand 4	K	165	169	parallel
Strand 5	K	199	201	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	259	261	first strand
Strand 2	K	269	273	anti-parallel
Strand 3	K	366	370	anti-parallel
Strand 4	K	431	435	anti-parallel
Strand 5	K	409	416	anti-parallel
Strand 6	K	394	400	anti-parallel
Strand 7	K	347	352	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	319	322	first strand
Strand 2	K	325	328	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	375	376	first strand
Strand 2	L	540	541	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	79	84	first strand
Strand 2	L	54	57	anti-parallel
Strand 3	L	8	13	parallel
Strand 4	L	129	134	parallel
Strand 5	L	160	161	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	164	165	first strand
Strand 2	L	225	226	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	249	251	first strand
Strand 2	L	259	263	anti-parallel
Strand 3	L	357	366	anti-parallel
Strand 4	L	418	423	anti-parallel
Strand 5	L	409	411	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	313	316	first strand
Strand 2	L	319	322	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	342	347	first strand
Strand 2	L	389	395	anti-parallel
Strand 3	L	404	406	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	464	466	first strand
Strand 2	L	473	475	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	102	first strand
Strand 2	B	96	98	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	B	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	B	45	46	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	103	104	first strand
Strand 2	M	85	87	anti-parallel
Strand 3	M	35	42	parallel
Strand 4	M	161	167	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	261	262	first strand
Strand 2	M	345	352	parallel
Strand 3	M	394	400	anti-parallel
Strand 4	M	409	414	anti-parallel
Strand 5	M	432	435	anti-parallel
Strand 6	M	366	370	anti-parallel
Strand 7	M	271	274	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	287	289	first strand
Strand 2	N	310	316	anti-parallel
Strand 3	N	319	322	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	318	319	first strand
Strand 2	M	328	329	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	78	84	first strand
Strand 2	N	54	58	anti-parallel
Strand 3	N	9	14	parallel
Strand 4	N	130	135	parallel
Strand 5	N	160	165	parallel
Strand 6	N	224	226	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	250	253	first strand
Strand 2	N	259	267	anti-parallel
Strand 3	N	357	366	anti-parallel
Strand 4	N	418	423	anti-parallel
Strand 5	N	404	411	anti-parallel
Strand 6	N	391	395	anti-parallel
Strand 7	N	340	345	anti-parallel
Strand 8	N	250	253	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	464	467	first strand
Strand 2	N	472	475	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	F	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	F	45	46	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q8X

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q8X