Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q8Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q8Z entry

There are 2 chains in PDB entry 9Q8Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 104	TYR 731
B	ARG 170	PRO 835

There are 40 helices in PDB entry 9Q8Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	108	114	Right-handed alpha
Helix 2	AA2	A	129	142	Right-handed alpha
Helix 3	AA3	A	143	145	Right-handed 310
Helix 4	AA4	A	172	187	Right-handed alpha
Helix 5	AA5	A	206	215	Right-handed alpha
Helix 6	AA6	A	245	248	Right-handed 310
Helix 7	AA7	A	253	260	Right-handed alpha
Helix 8	AA8	A	262	270	Right-handed alpha
Helix 9	AA9	A	274	287	Right-handed alpha
Helix 10	AB1	A	315	319	Right-handed 310
Helix 11	AB2	A	329	364	Right-handed alpha
Helix 12	AB3	A	416	438	Right-handed alpha
Helix 13	AB4	A	521	534	Right-handed alpha
Helix 14	AB5	A	563	577	Right-handed alpha
Helix 15	AB6	A	593	604	Right-handed alpha
Helix 16	AB7	A	621	631	Right-handed alpha
Helix 17	AB8	A	681	693	Right-handed alpha
Helix 18	AB9	A	700	704	Right-handed alpha
Helix 19	AC1	A	706	714	Right-handed alpha
Helix 20	AC2	B	180	184	Right-handed 310
Helix 21	AC3	B	187	193	Right-handed alpha
Helix 22	AC4	B	237	251	Right-handed alpha
Helix 23	AC5	B	267	277	Right-handed alpha
Helix 24	AC6	B	319	326	Right-handed alpha
Helix 25	AC7	B	328	335	Right-handed alpha
Helix 26	AC8	B	340	352	Right-handed alpha
Helix 27	AC9	B	361	367	Right-handed alpha
Helix 28	AD1	B	384	390	Right-handed alpha
Helix 29	AD2	B	398	435	Right-handed alpha
Helix 30	AD3	B	440	446	Right-handed alpha
Helix 31	AD4	B	459	463	Right-handed 310
Helix 32	AD5	B	488	507	Right-handed alpha
Helix 33	AD6	B	508	510	Right-handed 310
Helix 34	AD7	B	579	589	Right-handed alpha
Helix 35	AD8	B	630	645	Right-handed alpha
Helix 36	AD9	B	665	681	Right-handed alpha
Helix 37	AE1	B	696	707	Right-handed alpha
Helix 38	AE2	B	724	735	Right-handed alpha
Helix 39	AE3	B	787	793	Right-handed alpha
Helix 40	AE4	B	806	817	Right-handed alpha

There are 12 sheets in PDB entry 9Q8Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	167	first strand
Strand 2	A	148	152	parallel
Strand 3	A	117	125	parallel
Strand 4	A	192	199	parallel
Strand 5	A	249	252	anti-parallel
Strand 6	A	225	226	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	323	325	anti-parallel
Strand 3	A	302	304	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	231	first strand
Strand 2	A	241	243	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	402	first strand
Strand 2	A	412	413	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	443	first strand
Strand 2	A	460	472	anti-parallel
Strand 3	A	478	497	anti-parallel
Strand 4	B	557	567	anti-parallel
Strand 5	B	534	544	anti-parallel
Strand 6	B	518	530	anti-parallel
Strand 7	B	467	469	anti-parallel
Strand 8	B	473	475	anti-parallel
Strand 9	B	485	486	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	456	first strand
Strand 2	A	460	472	anti-parallel
Strand 3	A	478	497	anti-parallel
Strand 4	B	571	574	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	587	first strand
Strand 2	A	541	548	parallel
Strand 3	A	508	514	parallel
Strand 4	A	610	613	parallel
Strand 5	A	677	680	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	668	669	first strand
Strand 2	A	642	645	anti-parallel
Strand 3	A	723	728	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	226	first strand
Strand 2	B	201	208	parallel
Strand 3	B	173	178	parallel
Strand 4	B	256	261	parallel
Strand 5	B	315	318	anti-parallel
Strand 6	B	285	286	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	266	first strand
Strand 2	B	392	393	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	686	691	first strand
Strand 2	B	652	659	parallel
Strand 3	B	621	627	parallel
Strand 4	B	713	715	parallel
Strand 5	B	784	786	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	721	723	first strand
Strand 2	B	820	831	anti-parallel
Strand 3	B	740	749	parallel
Strand 4	B	773	775	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q8Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q8Z