Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q9H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q9H entry

There are 6 chains in PDB entry 9Q9H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 1312
B	MET 1	HIS 1312
D	ASP 8	ASN 511
E	LEU 7	GLN 509
P	T 5	T 29
T	A 2	A 26

There are 59 helices in PDB entry 9Q9H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	54	Right-handed alpha
Helix 2	AA2	A	62	67	Right-handed alpha
Helix 3	AA3	A	69	74	Right-handed alpha
Helix 4	AA4	A	132	145	Right-handed alpha
Helix 5	AA5	A	147	154	Right-handed alpha
Helix 6	AA6	A	163	167	Right-handed 310
Helix 7	AA7	A	168	174	Right-handed alpha
Helix 8	AA8	A	182	242	Right-handed alpha
Helix 9	AA9	A	1070	1093	Right-handed alpha
Helix 10	AB1	A	1094	1099	Right-handed alpha
Helix 11	AB2	A	1099	1155	Right-handed alpha
Helix 12	AB3	A	1202	1221	Right-handed alpha
Helix 13	AB4	A	1238	1257	Right-handed alpha
Helix 14	AB5	A	1270	1280	Right-handed alpha
Helix 15	AB6	A	1306	1310	Right-handed 310
Helix 16	AB7	B	18	22	Right-handed 310
Helix 17	AB8	B	42	55	Right-handed alpha
Helix 18	AB9	B	62	67	Right-handed alpha
Helix 19	AC1	B	69	74	Right-handed alpha
Helix 20	AC2	B	132	145	Right-handed alpha
Helix 21	AC3	B	147	154	Right-handed alpha
Helix 22	AC4	B	163	167	Right-handed 310
Helix 23	AC5	B	168	180	Right-handed alpha
Helix 24	AC6	B	182	245	Right-handed alpha
Helix 25	AC7	B	1072	1093	Right-handed alpha
Helix 26	AC8	B	1099	1155	Right-handed alpha
Helix 27	AC9	B	1197	1201	Right-handed alpha
Helix 28	AD1	B	1202	1221	Right-handed alpha
Helix 29	AD2	B	1238	1257	Right-handed alpha
Helix 30	AD3	B	1272	1280	Right-handed alpha
Helix 31	AD4	B	1305	1307	Right-handed 310
Helix 32	AD5	D	35	51	Right-handed alpha
Helix 33	AD6	D	68	83	Right-handed alpha
Helix 34	AD7	D	96	101	Right-handed alpha
Helix 35	AD8	D	109	113	Right-handed 310
Helix 36	AD9	D	139	148	Right-handed alpha
Helix 37	AE1	D	185	195	Right-handed alpha
Helix 38	AE2	D	206	210	Right-handed 310
Helix 39	AE3	D	230	234	Right-handed 310
Helix 40	AE4	D	315	317	Right-handed 310
Helix 41	AE5	D	327	351	Right-handed alpha
Helix 42	AE6	D	382	386	Right-handed 310
Helix 43	AE7	D	428	444	Right-handed alpha
Helix 44	AE8	D	454	464	Right-handed alpha
Helix 45	AE9	D	468	489	Right-handed alpha
Helix 46	AF1	D	493	509	Right-handed alpha
Helix 47	AF2	E	35	50	Right-handed alpha
Helix 48	AF3	E	68	83	Right-handed alpha
Helix 49	AF4	E	96	101	Right-handed alpha
Helix 50	AF5	E	109	113	Right-handed 310
Helix 51	AF6	E	139	147	Right-handed alpha
Helix 52	AF7	E	185	195	Right-handed alpha
Helix 53	AF8	E	275	280	Right-handed 310
Helix 54	AF9	E	327	352	Right-handed alpha
Helix 55	AG1	E	377	382	Right-handed alpha
Helix 56	AG2	E	428	444	Right-handed alpha
Helix 57	AG3	E	452	464	Right-handed alpha
Helix 58	AG4	E	470	488	Right-handed alpha
Helix 59	AG5	E	494	507	Right-handed alpha

There are 21 sheets in PDB entry 9Q9H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	3	10	anti-parallel
Strand 3	A	79	87	anti-parallel
Strand 4	A	93	101	anti-parallel
Strand 5	A	112	117	anti-parallel
Strand 6	A	130	131	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	1285	1290	parallel
Strand 3	A	1298	1303	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1163	1166	first strand
Strand 2	A	1185	1190	anti-parallel
Strand 3	A	1193	1196	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1227	1228	first strand
Strand 2	A	1263	1264	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	4	10	anti-parallel
Strand 3	B	77	87	anti-parallel
Strand 4	B	93	94	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	4	10	anti-parallel
Strand 3	B	77	87	anti-parallel
Strand 4	B	97	105	anti-parallel
Strand 5	B	108	117	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1228	1231	first strand
Strand 2	B	1264	1267	parallel
Strand 3	B	33	35	parallel
Strand 4	B	1285	1291	parallel
Strand 5	B	1297	1303	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	122	first strand
Strand 2	B	125	126	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1164	1168	first strand
Strand 2	B	1183	1190	anti-parallel
Strand 3	B	1193	1196	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	18	first strand
Strand 2	D	54	57	parallel
Strand 3	D	122	124	parallel
Strand 4	D	151	152	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	93	first strand
Strand 2	D	167	171	anti-parallel
Strand 3	D	174	181	anti-parallel
Strand 4	D	211	218	parallel
Strand 5	D	240	244	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	164	first strand
Strand 2	D	198	200	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	254	first strand
Strand 2	D	263	265	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	284	first strand
Strand 2	D	299	300	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	290	first strand
Strand 2	D	293	296	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	313	first strand
Strand 2	D	362	368	parallel
Strand 3	D	396	399	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	152	first strand
Strand 2	E	122	124	parallel
Strand 3	E	54	57	parallel
Strand 4	E	13	18	parallel
Strand 5	E	287	290	anti-parallel
Strand 6	E	293	296	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	93	first strand
Strand 2	E	168	171	anti-parallel
Strand 3	E	174	181	anti-parallel
Strand 4	E	213	217	parallel
Strand 5	E	240	244	parallel
Strand 6	E	262	265	parallel
Strand 7	E	250	254	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	164	first strand
Strand 2	E	198	200	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	284	first strand
Strand 2	E	299	300	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	307	312	first strand
Strand 2	E	362	367	parallel
Strand 3	E	396	398	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q9H

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q9H