Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q9J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q9J entry

There are 8 chains in PDB entry 9Q9J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	GLY 458	GLN 475
P	T 5	T 30
T	A 7	A 32
F	PRO 651	LYS 751
A	MET 1	PHE 1309
B	MET 1	HIS 1312
D	ASP 8	ARG 508
E	LEU 7	GLN 509

There are 59 helices in PDB entry 9Q9J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	467	472	Right-handed alpha
Helix 2	AA2	F	716	746	Right-handed alpha
Helix 3	AA3	A	18	22	Right-handed 310
Helix 4	AA4	A	41	55	Right-handed alpha
Helix 5	AA5	A	62	67	Right-handed alpha
Helix 6	AA6	A	132	145	Right-handed alpha
Helix 7	AA7	A	147	154	Right-handed alpha
Helix 8	AA8	A	163	167	Right-handed 310
Helix 9	AA9	A	168	180	Right-handed alpha
Helix 10	AB1	A	182	236	Right-handed alpha
Helix 11	AB2	A	1079	1092	Right-handed alpha
Helix 12	AB3	A	1094	1099	Right-handed alpha
Helix 13	AB4	A	1100	1155	Right-handed alpha
Helix 14	AB5	A	1202	1222	Right-handed alpha
Helix 15	AB6	A	1238	1258	Right-handed alpha
Helix 16	AB7	A	1270	1278	Right-handed alpha
Helix 17	AB8	A	1279	1281	Right-handed 310
Helix 18	AB9	B	18	22	Right-handed 310
Helix 19	AC1	B	41	55	Right-handed alpha
Helix 20	AC2	B	132	145	Right-handed alpha
Helix 21	AC3	B	147	154	Right-handed alpha
Helix 22	AC4	B	158	162	Right-handed 310
Helix 23	AC5	B	163	167	Right-handed 310
Helix 24	AC6	B	168	180	Right-handed alpha
Helix 25	AC7	B	182	237	Right-handed alpha
Helix 26	AC8	B	1079	1092	Right-handed alpha
Helix 27	AC9	B	1094	1099	Right-handed alpha
Helix 28	AD1	B	1099	1155	Right-handed alpha
Helix 29	AD2	B	1202	1222	Right-handed alpha
Helix 30	AD3	B	1238	1257	Right-handed alpha
Helix 31	AD4	B	1270	1281	Right-handed alpha
Helix 32	AD5	B	1305	1310	Right-handed 310
Helix 33	AD6	D	35	50	Right-handed alpha
Helix 34	AD7	D	68	83	Right-handed alpha
Helix 35	AD8	D	96	101	Right-handed alpha
Helix 36	AD9	D	139	148	Right-handed alpha
Helix 37	AE1	D	185	195	Right-handed alpha
Helix 38	AE2	D	206	210	Right-handed 310
Helix 39	AE3	D	315	317	Right-handed 310
Helix 40	AE4	D	327	352	Right-handed alpha
Helix 41	AE5	D	377	383	Right-handed alpha
Helix 42	AE6	D	384	386	Right-handed 310
Helix 43	AE7	D	428	444	Right-handed alpha
Helix 44	AE8	D	452	464	Right-handed alpha
Helix 45	AE9	D	469	488	Right-handed alpha
Helix 46	AF1	D	493	508	Right-handed alpha
Helix 47	AF2	E	34	50	Right-handed alpha
Helix 48	AF3	E	68	83	Right-handed alpha
Helix 49	AF4	E	96	101	Right-handed alpha
Helix 50	AF5	E	109	113	Right-handed 310
Helix 51	AF6	E	139	148	Right-handed alpha
Helix 52	AF7	E	185	195	Right-handed alpha
Helix 53	AF8	E	275	280	Right-handed 310
Helix 54	AF9	E	327	352	Right-handed alpha
Helix 55	AG1	E	377	384	Right-handed alpha
Helix 56	AG2	E	428	444	Right-handed alpha
Helix 57	AG3	E	453	465	Right-handed alpha
Helix 58	AG4	E	468	488	Right-handed alpha
Helix 59	AG5	E	493	508	Right-handed alpha

There are 16 sheets in PDB entry 9Q9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	460	462	first strand
Strand 2	B	1297	1303	anti-parallel
Strand 3	B	1285	1291	anti-parallel
Strand 4	B	33	35	parallel
Strand 5	B	1266	1267	parallel
Strand 6	B	1230	1231	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	656	660	first strand
Strand 2	D	198	203	parallel
Strand 3	D	162	164	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	708	711	first strand
Strand 2	E	198	203	anti-parallel
Strand 3	E	162	164	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	3	10	anti-parallel
Strand 3	A	77	87	anti-parallel
Strand 4	A	93	105	anti-parallel
Strand 5	A	108	113	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	3	10	anti-parallel
Strand 3	A	77	87	anti-parallel
Strand 4	A	93	105	anti-parallel
Strand 5	A	116	122	anti-parallel
Strand 6	A	125	131	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1227	1231	first strand
Strand 2	A	1263	1267	parallel
Strand 3	A	31	35	parallel
Strand 4	A	1285	1291	parallel
Strand 5	A	1297	1303	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1163	1168	first strand
Strand 2	A	1183	1190	anti-parallel
Strand 3	A	1193	1196	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	3	10	anti-parallel
Strand 3	B	77	87	anti-parallel
Strand 4	B	93	105	anti-parallel
Strand 5	B	116	122	anti-parallel
Strand 6	B	125	126	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	113	first strand
Strand 2	B	93	105	anti-parallel
Strand 3	B	116	122	anti-parallel
Strand 4	B	129	131	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1163	1168	first strand
Strand 2	B	1183	1190	anti-parallel
Strand 3	B	1193	1196	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	152	first strand
Strand 2	D	122	124	parallel
Strand 3	D	54	57	parallel
Strand 4	D	12	17	parallel
Strand 5	D	283	290	anti-parallel
Strand 6	D	293	300	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	93	first strand
Strand 2	D	167	171	anti-parallel
Strand 3	D	174	181	anti-parallel
Strand 4	D	211	216	parallel
Strand 5	D	240	243	parallel
Strand 6	D	262	265	parallel
Strand 7	D	250	255	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	313	first strand
Strand 2	D	362	368	parallel
Strand 3	D	396	399	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	152	first strand
Strand 2	E	122	124	parallel
Strand 3	E	54	57	parallel
Strand 4	E	13	18	parallel
Strand 5	E	283	290	anti-parallel
Strand 6	E	293	300	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	93	first strand
Strand 2	E	167	171	anti-parallel
Strand 3	E	174	181	anti-parallel
Strand 4	E	213	217	parallel
Strand 5	E	240	244	parallel
Strand 6	E	262	264	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	307	313	first strand
Strand 2	E	362	368	parallel
Strand 3	E	396	399	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q9J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q9J