Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q9L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q9L entry

There are 3 chains in PDB entry 9Q9L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 90	LYS 807
B	VAL 90	LYS 807
C	VAL 90	LYS 807

There are 63 helices in PDB entry 9Q9L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	91	107	Right-handed alpha
Helix 2	AA2	A	173	176	Right-handed 310
Helix 3	AA3	A	179	183	Right-handed 310
Helix 4	AA4	A	193	200	Right-handed alpha
Helix 5	AA5	A	225	227	Right-handed 310
Helix 6	AA6	A	257	265	Right-handed alpha
Helix 7	AA7	A	306	310	Right-handed 310
Helix 8	AA8	A	315	317	Right-handed 310
Helix 9	AA9	A	403	407	Right-handed 310
Helix 10	AB1	A	413	429	Right-handed alpha
Helix 11	AB2	A	458	475	Right-handed alpha
Helix 12	AB3	A	502	506	Right-handed 310
Helix 13	AB4	A	510	546	Right-handed alpha
Helix 14	AB5	A	546	556	Right-handed alpha
Helix 15	AB6	A	577	579	Right-handed 310
Helix 16	AB7	A	686	691	Right-handed alpha
Helix 17	AB8	A	701	725	Right-handed alpha
Helix 18	AB9	A	727	741	Right-handed alpha
Helix 19	AC1	A	742	771	Right-handed alpha
Helix 20	AC2	A	773	804	Right-handed alpha
Helix 21	AC3	B	91	106	Right-handed alpha
Helix 22	AC4	B	179	184	Right-handed 310
Helix 23	AC5	B	193	200	Right-handed alpha
Helix 24	AC6	B	200	205	Right-handed alpha
Helix 25	AC7	B	225	227	Right-handed 310
Helix 26	AC8	B	257	262	Right-handed alpha
Helix 27	AC9	B	306	310	Right-handed 310
Helix 28	AD1	B	315	317	Right-handed 310
Helix 29	AD2	B	403	407	Right-handed 310
Helix 30	AD3	B	411	429	Right-handed alpha
Helix 31	AD4	B	458	475	Right-handed alpha
Helix 32	AD5	B	502	507	Right-handed alpha
Helix 33	AD6	B	510	546	Right-handed alpha
Helix 34	AD7	B	546	556	Right-handed alpha
Helix 35	AD8	B	577	579	Right-handed 310
Helix 36	AD9	B	662	664	Right-handed 310
Helix 37	AE1	B	686	691	Right-handed alpha
Helix 38	AE2	B	701	725	Right-handed alpha
Helix 39	AE3	B	727	742	Right-handed alpha
Helix 40	AE4	B	743	772	Right-handed alpha
Helix 41	AE5	B	773	804	Right-handed alpha
Helix 42	AE6	C	91	106	Right-handed alpha
Helix 43	AE7	C	173	176	Right-handed 310
Helix 44	AE8	C	179	184	Right-handed alpha
Helix 45	AE9	C	193	200	Right-handed alpha
Helix 46	AF1	C	225	227	Right-handed 310
Helix 47	AF2	C	250	254	Right-handed 310
Helix 48	AF3	C	255	256	Right-handed 310
Helix 49	AF4	C	257	265	Right-handed alpha
Helix 50	AF5	C	315	317	Right-handed 310
Helix 51	AF6	C	403	407	Right-handed 310
Helix 52	AF7	C	413	429	Right-handed alpha
Helix 53	AF8	C	458	474	Right-handed alpha
Helix 54	AF9	C	502	506	Right-handed 310
Helix 55	AG1	C	510	546	Right-handed alpha
Helix 56	AG2	C	546	556	Right-handed alpha
Helix 57	AG3	C	577	579	Right-handed 310
Helix 58	AG4	C	662	664	Right-handed 310
Helix 59	AG5	C	686	691	Right-handed alpha
Helix 60	AG6	C	701	725	Right-handed alpha
Helix 61	AG7	C	727	740	Right-handed alpha
Helix 62	AG8	C	742	771	Right-handed alpha
Helix 63	AG9	C	773	804	Right-handed alpha

There are 33 sheets in PDB entry 9Q9L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	115	first strand
Strand 2	A	574	576	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	563	first strand
Strand 2	A	568	572	anti-parallel
Strand 3	A	124	126	anti-parallel
Strand 4	B	665	666	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	383	387	anti-parallel
Strand 3	A	366	380	anti-parallel
Strand 4	A	140	152	anti-parallel
Strand 5	A	448	457	anti-parallel
Strand 6	A	433	435	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	383	387	anti-parallel
Strand 3	A	366	380	anti-parallel
Strand 4	A	140	152	anti-parallel
Strand 5	A	448	457	anti-parallel
Strand 6	A	440	444	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	157	171	anti-parallel
Strand 3	A	267	280	anti-parallel
Strand 4	A	287	289	anti-parallel
Strand 5	A	294	295	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	236	first strand
Strand 2	A	246	248	anti-parallel
Strand 3	A	267	280	anti-parallel
Strand 4	A	157	171	anti-parallel
Strand 5	A	350	355	anti-parallel
Strand 6	A	340	347	anti-parallel
Strand 7	A	319	325	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	207	first strand
Strand 2	A	232	233	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	215	first strand
Strand 2	A	218	223	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	581	583	first strand
Strand 2	A	601	604	anti-parallel
Strand 3	A	613	617	anti-parallel
Strand 4	A	623	624	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	597	first strand
Strand 2	A	630	632	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	638	643	first strand
Strand 2	A	646	651	anti-parallel
Strand 3	A	654	660	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	665	666	first strand
Strand 2	C	124	126	parallel
Strand 3	C	568	572	anti-parallel
Strand 4	C	559	563	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	115	first strand
Strand 2	B	574	576	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	559	563	first strand
Strand 2	B	568	572	anti-parallel
Strand 3	B	124	127	anti-parallel
Strand 4	C	665	667	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	397	first strand
Strand 2	B	383	387	anti-parallel
Strand 3	B	366	380	anti-parallel
Strand 4	B	140	152	anti-parallel
Strand 5	B	448	457	anti-parallel
Strand 6	B	433	435	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	397	first strand
Strand 2	B	383	387	anti-parallel
Strand 3	B	366	380	anti-parallel
Strand 4	B	140	152	anti-parallel
Strand 5	B	448	457	anti-parallel
Strand 6	B	440	444	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	191	first strand
Strand 2	B	157	170	anti-parallel
Strand 3	B	267	280	anti-parallel
Strand 4	B	287	289	anti-parallel
Strand 5	B	294	295	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	236	first strand
Strand 2	B	246	248	anti-parallel
Strand 3	B	267	280	anti-parallel
Strand 4	B	157	170	anti-parallel
Strand 5	B	350	355	anti-parallel
Strand 6	B	340	347	anti-parallel
Strand 7	B	319	325	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	207	first strand
Strand 2	B	232	233	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	215	first strand
Strand 2	B	218	223	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	581	583	first strand
Strand 2	B	601	604	anti-parallel
Strand 3	B	613	617	anti-parallel
Strand 4	B	623	624	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	597	first strand
Strand 2	B	630	632	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	643	first strand
Strand 2	B	646	651	anti-parallel
Strand 3	B	654	660	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	115	first strand
Strand 2	C	574	576	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	372	first strand
Strand 2	C	140	152	anti-parallel
Strand 3	C	448	457	anti-parallel
Strand 4	C	433	435	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	397	first strand
Strand 2	C	383	387	anti-parallel
Strand 3	C	376	380	anti-parallel
Strand 4	C	140	152	anti-parallel
Strand 5	C	448	457	anti-parallel
Strand 6	C	440	444	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	191	first strand
Strand 2	C	157	171	anti-parallel
Strand 3	C	267	280	anti-parallel
Strand 4	C	287	289	anti-parallel
Strand 5	C	294	295	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	236	first strand
Strand 2	C	246	248	anti-parallel
Strand 3	C	267	280	anti-parallel
Strand 4	C	157	171	anti-parallel
Strand 5	C	350	355	anti-parallel
Strand 6	C	340	347	anti-parallel
Strand 7	C	319	325	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	207	first strand
Strand 2	C	232	233	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	215	first strand
Strand 2	C	218	223	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	581	583	first strand
Strand 2	C	601	604	anti-parallel
Strand 3	C	613	617	anti-parallel
Strand 4	C	623	624	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	595	597	first strand
Strand 2	C	630	632	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	638	643	first strand
Strand 2	C	646	651	anti-parallel
Strand 3	C	654	660	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q9L

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q9L