Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q9N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q9N entry

There are 6 chains in PDB entry 9Q9N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 90	ALA 808
B	VAL 90	ALA 808
C	VAL 90	ALA 808
d	GLN 1	VAL 115
e	GLN 1	VAL 115
f	GLN 1	VAL 115

There are 71 helices in PDB entry 9Q9N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	91	107	Right-handed alpha
Helix 2	AA2	A	172	175	Right-handed 310
Helix 3	AA3	A	176	181	Right-handed alpha
Helix 4	AA4	A	182	184	Right-handed 310
Helix 5	AA5	A	193	200	Right-handed alpha
Helix 6	AA6	A	200	205	Right-handed alpha
Helix 7	AA7	A	225	227	Right-handed 310
Helix 8	AA8	A	257	263	Right-handed alpha
Helix 9	AA9	A	315	317	Right-handed 310
Helix 10	AB1	A	403	407	Right-handed 310
Helix 11	AB2	A	413	428	Right-handed alpha
Helix 12	AB3	A	429	431	Right-handed 310
Helix 13	AB4	A	458	473	Right-handed alpha
Helix 14	AB5	A	502	507	Right-handed alpha
Helix 15	AB6	A	510	546	Right-handed alpha
Helix 16	AB7	A	546	556	Right-handed alpha
Helix 17	AB8	A	577	579	Right-handed 310
Helix 18	AB9	A	662	664	Right-handed 310
Helix 19	AC1	A	685	689	Right-handed 310
Helix 20	AC2	A	701	725	Right-handed alpha
Helix 21	AC3	A	726	741	Right-handed alpha
Helix 22	AC4	A	742	773	Right-handed alpha
Helix 23	AC5	A	773	803	Right-handed alpha
Helix 24	AC6	B	91	105	Right-handed alpha
Helix 25	AC7	B	173	175	Right-handed 310
Helix 26	AC8	B	176	181	Right-handed alpha
Helix 27	AC9	B	193	200	Right-handed alpha
Helix 28	AD1	B	200	205	Right-handed alpha
Helix 29	AD2	B	225	227	Right-handed 310
Helix 30	AD3	B	251	255	Right-handed 310
Helix 31	AD4	B	257	264	Right-handed alpha
Helix 32	AD5	B	315	317	Right-handed 310
Helix 33	AD6	B	403	407	Right-handed 310
Helix 34	AD7	B	411	429	Right-handed alpha
Helix 35	AD8	B	458	474	Right-handed alpha
Helix 36	AD9	B	502	507	Right-handed alpha
Helix 37	AE1	B	510	546	Right-handed alpha
Helix 38	AE2	B	546	556	Right-handed alpha
Helix 39	AE3	B	577	579	Right-handed 310
Helix 40	AE4	B	662	664	Right-handed 310
Helix 41	AE5	B	685	690	Right-handed 310
Helix 42	AE6	B	701	725	Right-handed alpha
Helix 43	AE7	B	726	741	Right-handed alpha
Helix 44	AE8	B	742	773	Right-handed alpha
Helix 45	AE9	B	773	803	Right-handed alpha
Helix 46	AF1	C	91	106	Right-handed alpha
Helix 47	AF2	C	173	175	Right-handed 310
Helix 48	AF3	C	176	181	Right-handed alpha
Helix 49	AF4	C	193	200	Right-handed alpha
Helix 50	AF5	C	225	227	Right-handed 310
Helix 51	AF6	C	257	264	Right-handed alpha
Helix 52	AF7	C	315	317	Right-handed 310
Helix 53	AF8	C	403	407	Right-handed 310
Helix 54	AF9	C	411	429	Right-handed alpha
Helix 55	AG1	C	458	473	Right-handed alpha
Helix 56	AG2	C	502	507	Right-handed alpha
Helix 57	AG3	C	510	546	Right-handed alpha
Helix 58	AG4	C	546	556	Right-handed alpha
Helix 59	AG5	C	577	579	Right-handed 310
Helix 60	AG6	C	662	664	Right-handed 310
Helix 61	AG7	C	686	692	Right-handed alpha
Helix 62	AG8	C	701	725	Right-handed alpha
Helix 63	AG9	C	726	743	Right-handed alpha
Helix 64	AH1	C	743	772	Right-handed alpha
Helix 65	AH2	C	773	803	Right-handed alpha
Helix 66	AH3	d	29	33	Right-handed 310
Helix 67	AH4	d	88	92	Right-handed 310
Helix 68	AH5	e	29	33	Right-handed 310
Helix 69	AH6	e	88	92	Right-handed 310
Helix 70	AH7	f	29	33	Right-handed 310
Helix 71	AH8	f	88	92	Right-handed 310

There are 39 sheets in PDB entry 9Q9N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	576	first strand
Strand 2	A	113	115	anti-parallel
Strand 3	A	622	624	parallel
Strand 4	A	613	617	anti-parallel
Strand 5	A	601	604	anti-parallel
Strand 6	A	581	583	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	563	first strand
Strand 2	A	568	572	anti-parallel
Strand 3	A	124	126	anti-parallel
Strand 4	B	665	666	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	372	first strand
Strand 2	A	140	152	anti-parallel
Strand 3	A	448	457	anti-parallel
Strand 4	A	433	435	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	398	first strand
Strand 2	A	383	387	anti-parallel
Strand 3	A	376	380	anti-parallel
Strand 4	A	140	152	anti-parallel
Strand 5	A	448	457	anti-parallel
Strand 6	A	440	444	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	191	first strand
Strand 2	A	157	170	anti-parallel
Strand 3	A	267	280	anti-parallel
Strand 4	A	287	289	anti-parallel
Strand 5	A	294	295	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	236	first strand
Strand 2	A	246	248	anti-parallel
Strand 3	A	267	280	anti-parallel
Strand 4	A	157	170	anti-parallel
Strand 5	A	350	355	anti-parallel
Strand 6	A	340	347	anti-parallel
Strand 7	A	319	325	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	207	first strand
Strand 2	A	232	233	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	215	first strand
Strand 2	A	218	223	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	597	first strand
Strand 2	A	630	632	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	638	642	first strand
Strand 2	A	646	651	anti-parallel
Strand 3	A	654	660	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	665	666	first strand
Strand 2	C	124	126	parallel
Strand 3	C	568	572	anti-parallel
Strand 4	C	559	563	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	574	576	first strand
Strand 2	B	113	115	anti-parallel
Strand 3	B	622	624	parallel
Strand 4	B	613	617	anti-parallel
Strand 5	B	601	604	anti-parallel
Strand 6	B	581	583	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	559	563	first strand
Strand 2	B	568	572	anti-parallel
Strand 3	B	124	127	anti-parallel
Strand 4	C	665	667	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	372	first strand
Strand 2	B	140	152	anti-parallel
Strand 3	B	448	457	anti-parallel
Strand 4	B	433	435	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	398	first strand
Strand 2	B	383	387	anti-parallel
Strand 3	B	376	380	anti-parallel
Strand 4	B	140	152	anti-parallel
Strand 5	B	448	457	anti-parallel
Strand 6	B	440	444	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	191	first strand
Strand 2	B	157	171	anti-parallel
Strand 3	B	267	280	anti-parallel
Strand 4	B	287	289	anti-parallel
Strand 5	B	294	295	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	236	first strand
Strand 2	B	246	248	anti-parallel
Strand 3	B	267	280	anti-parallel
Strand 4	B	157	171	anti-parallel
Strand 5	B	351	355	anti-parallel
Strand 6	B	340	346	anti-parallel
Strand 7	B	319	325	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	207	first strand
Strand 2	B	232	233	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	215	first strand
Strand 2	B	218	223	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	597	first strand
Strand 2	B	630	632	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	642	first strand
Strand 2	B	646	651	anti-parallel
Strand 3	B	654	660	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	574	576	first strand
Strand 2	C	113	115	anti-parallel
Strand 3	C	622	624	parallel
Strand 4	C	613	617	anti-parallel
Strand 5	C	601	604	anti-parallel
Strand 6	C	581	583	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	372	first strand
Strand 2	C	140	152	anti-parallel
Strand 3	C	448	457	anti-parallel
Strand 4	C	433	435	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	398	first strand
Strand 2	C	383	387	anti-parallel
Strand 3	C	376	380	anti-parallel
Strand 4	C	140	152	anti-parallel
Strand 5	C	448	457	anti-parallel
Strand 6	C	440	444	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	191	first strand
Strand 2	C	157	171	anti-parallel
Strand 3	C	267	280	anti-parallel
Strand 4	C	287	289	anti-parallel
Strand 5	C	294	295	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	236	first strand
Strand 2	C	246	248	anti-parallel
Strand 3	C	267	280	anti-parallel
Strand 4	C	157	171	anti-parallel
Strand 5	C	351	355	anti-parallel
Strand 6	C	340	346	anti-parallel
Strand 7	C	319	325	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	207	first strand
Strand 2	C	232	233	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	215	first strand
Strand 2	C	218	223	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	595	597	first strand
Strand 2	C	630	632	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	638	642	first strand
Strand 2	C	646	651	anti-parallel
Strand 3	C	654	660	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	4	7	first strand
Strand 2	d	18	24	anti-parallel
Strand 3	d	79	84	anti-parallel
Strand 4	d	69	74	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	10	11	first strand
Strand 2	d	111	114	parallel
Strand 3	d	93	101	anti-parallel
Strand 4	d	35	40	anti-parallel
Strand 5	d	48	55	anti-parallel
Strand 6	d	58	61	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	10	11	first strand
Strand 2	d	111	114	parallel
Strand 3	d	93	101	anti-parallel
Strand 4	d	104	107	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	4	7	first strand
Strand 2	e	18	24	anti-parallel
Strand 3	e	79	84	anti-parallel
Strand 4	e	69	74	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	10	11	first strand
Strand 2	e	111	114	parallel
Strand 3	e	93	101	anti-parallel
Strand 4	e	35	40	anti-parallel
Strand 5	e	48	55	anti-parallel
Strand 6	e	58	61	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	10	11	first strand
Strand 2	e	111	114	parallel
Strand 3	e	93	101	anti-parallel
Strand 4	e	104	107	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	4	7	first strand
Strand 2	f	18	24	anti-parallel
Strand 3	f	79	84	anti-parallel
Strand 4	f	69	74	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	10	11	first strand
Strand 2	f	111	114	parallel
Strand 3	f	93	101	anti-parallel
Strand 4	f	35	40	anti-parallel
Strand 5	f	48	55	anti-parallel
Strand 6	f	58	61	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	10	11	first strand
Strand 2	f	111	114	parallel
Strand 3	f	93	101	anti-parallel
Strand 4	f	104	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q9N

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q9N