Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q9S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q9S entry

There are 6 chains in PDB entry 9Q9S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
d	GLN 1	VAL 115
e	GLN 1	VAL 115
f	GLN 1	VAL 115
A	ALA 90	LEU 683
B	ALA 90	LEU 683
C	ALA 90	LEU 683

There are 51 helices in PDB entry 9Q9S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	d	29	33	Right-handed 310
Helix 2	AA2	d	88	92	Right-handed 310
Helix 3	AA3	e	29	33	Right-handed 310
Helix 4	AA4	e	88	92	Right-handed 310
Helix 5	AA5	f	29	33	Right-handed 310
Helix 6	AA6	f	88	92	Right-handed 310
Helix 7	AA7	A	91	100	Right-handed alpha
Helix 8	AA8	A	188	195	Right-handed alpha
Helix 9	AA9	A	195	200	Right-handed alpha
Helix 10	AB1	A	218	222	Right-handed 310
Helix 11	AB2	A	310	312	Right-handed 310
Helix 12	AB3	A	398	402	Right-handed 310
Helix 13	AB4	A	406	423	Right-handed alpha
Helix 14	AB5	A	424	426	Right-handed 310
Helix 15	AB6	A	453	464	Right-handed alpha
Helix 16	AB7	A	500	506	Right-handed 310
Helix 17	AB8	A	507	543	Right-handed alpha
Helix 18	AB9	A	543	553	Right-handed alpha
Helix 19	AC1	A	574	576	Right-handed 310
Helix 20	AC2	A	657	661	Right-handed 310
Helix 21	AC3	A	666	672	Right-handed alpha
Helix 22	AC4	B	91	100	Right-handed alpha
Helix 23	AC5	B	188	195	Right-handed alpha
Helix 24	AC6	B	195	200	Right-handed alpha
Helix 25	AC7	B	218	222	Right-handed 310
Helix 26	AC8	B	310	312	Right-handed 310
Helix 27	AC9	B	398	402	Right-handed 310
Helix 28	AD1	B	406	423	Right-handed alpha
Helix 29	AD2	B	424	426	Right-handed 310
Helix 30	AD3	B	453	464	Right-handed alpha
Helix 31	AD4	B	500	504	Right-handed 310
Helix 32	AD5	B	507	543	Right-handed alpha
Helix 33	AD6	B	543	553	Right-handed alpha
Helix 34	AD7	B	574	576	Right-handed 310
Helix 35	AD8	B	659	661	Right-handed 310
Helix 36	AD9	B	666	672	Right-handed alpha
Helix 37	AE1	C	91	100	Right-handed alpha
Helix 38	AE2	C	188	195	Right-handed alpha
Helix 39	AE3	C	195	200	Right-handed alpha
Helix 40	AE4	C	218	222	Right-handed 310
Helix 41	AE5	C	310	312	Right-handed 310
Helix 42	AE6	C	398	402	Right-handed 310
Helix 43	AE7	C	406	423	Right-handed alpha
Helix 44	AE8	C	424	426	Right-handed 310
Helix 45	AE9	C	453	464	Right-handed alpha
Helix 46	AF1	C	500	504	Right-handed 310
Helix 47	AF2	C	507	543	Right-handed alpha
Helix 48	AF3	C	543	553	Right-handed alpha
Helix 49	AF4	C	574	576	Right-handed 310
Helix 50	AF5	C	659	661	Right-handed 310
Helix 51	AF6	C	666	672	Right-handed alpha

There are 39 sheets in PDB entry 9Q9S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	4	7	first strand
Strand 2	d	18	24	anti-parallel
Strand 3	d	79	84	anti-parallel
Strand 4	d	69	74	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	10	11	first strand
Strand 2	d	111	114	parallel
Strand 3	d	93	101	anti-parallel
Strand 4	d	35	42	anti-parallel
Strand 5	d	45	53	anti-parallel
Strand 6	d	60	61	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	10	11	first strand
Strand 2	d	111	114	parallel
Strand 3	d	93	101	anti-parallel
Strand 4	d	104	107	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	4	7	first strand
Strand 2	e	18	24	anti-parallel
Strand 3	e	79	84	anti-parallel
Strand 4	e	69	74	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	10	11	first strand
Strand 2	e	111	114	parallel
Strand 3	e	93	101	anti-parallel
Strand 4	e	35	42	anti-parallel
Strand 5	e	45	55	anti-parallel
Strand 6	e	58	61	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	10	11	first strand
Strand 2	e	111	114	parallel
Strand 3	e	93	101	anti-parallel
Strand 4	e	104	107	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	4	7	first strand
Strand 2	f	18	24	anti-parallel
Strand 3	f	79	84	anti-parallel
Strand 4	f	69	74	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	10	11	first strand
Strand 2	f	111	114	parallel
Strand 3	f	93	101	anti-parallel
Strand 4	f	35	42	anti-parallel
Strand 5	f	45	55	anti-parallel
Strand 6	f	58	61	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	10	11	first strand
Strand 2	f	111	114	parallel
Strand 3	f	93	101	anti-parallel
Strand 4	f	104	107	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	573	first strand
Strand 2	A	108	110	anti-parallel
Strand 3	A	619	621	parallel
Strand 4	A	610	614	anti-parallel
Strand 5	A	598	601	anti-parallel
Strand 6	A	578	580	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	559	first strand
Strand 2	A	565	569	anti-parallel
Strand 3	A	119	121	anti-parallel
Strand 4	B	662	663	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	378	382	anti-parallel
Strand 3	A	361	375	anti-parallel
Strand 4	A	135	147	anti-parallel
Strand 5	A	443	452	anti-parallel
Strand 6	A	428	430	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	378	382	anti-parallel
Strand 3	A	361	375	anti-parallel
Strand 4	A	135	147	anti-parallel
Strand 5	A	443	452	anti-parallel
Strand 6	A	435	438	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	A	152	163	anti-parallel
Strand 3	A	264	275	anti-parallel
Strand 4	A	282	284	anti-parallel
Strand 5	A	289	290	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	241	243	anti-parallel
Strand 3	A	264	275	anti-parallel
Strand 4	A	152	163	anti-parallel
Strand 5	A	345	350	anti-parallel
Strand 6	A	335	342	anti-parallel
Strand 7	A	314	320	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	226	228	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	210	first strand
Strand 2	A	213	217	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	592	594	first strand
Strand 2	A	627	629	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	635	640	first strand
Strand 2	A	643	648	anti-parallel
Strand 3	A	651	656	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	662	663	first strand
Strand 2	C	119	121	parallel
Strand 3	C	565	569	anti-parallel
Strand 4	C	556	559	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	571	573	first strand
Strand 2	B	108	110	anti-parallel
Strand 3	B	619	621	parallel
Strand 4	B	610	614	anti-parallel
Strand 5	B	598	601	anti-parallel
Strand 6	B	578	580	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	556	559	first strand
Strand 2	B	565	569	anti-parallel
Strand 3	B	119	121	anti-parallel
Strand 4	C	662	663	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	392	first strand
Strand 2	B	378	382	anti-parallel
Strand 3	B	361	375	anti-parallel
Strand 4	B	135	147	anti-parallel
Strand 5	B	443	452	anti-parallel
Strand 6	B	428	430	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	392	first strand
Strand 2	B	378	382	anti-parallel
Strand 3	B	361	375	anti-parallel
Strand 4	B	135	147	anti-parallel
Strand 5	B	443	452	anti-parallel
Strand 6	B	435	438	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	186	first strand
Strand 2	B	152	163	anti-parallel
Strand 3	B	264	275	anti-parallel
Strand 4	B	282	284	anti-parallel
Strand 5	B	289	290	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	231	first strand
Strand 2	B	241	243	anti-parallel
Strand 3	B	264	275	anti-parallel
Strand 4	B	152	163	anti-parallel
Strand 5	B	345	350	anti-parallel
Strand 6	B	335	342	anti-parallel
Strand 7	B	314	320	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	226	228	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	210	first strand
Strand 2	B	213	217	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	592	594	first strand
Strand 2	B	627	629	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	640	first strand
Strand 2	B	643	648	anti-parallel
Strand 3	B	651	657	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	571	573	first strand
Strand 2	C	108	110	anti-parallel
Strand 3	C	619	621	parallel
Strand 4	C	610	614	anti-parallel
Strand 5	C	598	601	anti-parallel
Strand 6	C	578	580	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	392	first strand
Strand 2	C	378	382	anti-parallel
Strand 3	C	361	375	anti-parallel
Strand 4	C	135	147	anti-parallel
Strand 5	C	443	452	anti-parallel
Strand 6	C	428	430	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	392	first strand
Strand 2	C	378	382	anti-parallel
Strand 3	C	361	375	anti-parallel
Strand 4	C	135	147	anti-parallel
Strand 5	C	443	452	anti-parallel
Strand 6	C	435	438	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	186	first strand
Strand 2	C	152	163	anti-parallel
Strand 3	C	264	275	anti-parallel
Strand 4	C	282	284	anti-parallel
Strand 5	C	289	290	anti-parallel

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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	231	first strand
Strand 2	C	241	243	anti-parallel
Strand 3	C	264	275	anti-parallel
Strand 4	C	152	163	anti-parallel
Strand 5	C	345	350	anti-parallel
Strand 6	C	335	342	anti-parallel
Strand 7	C	314	320	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	203	first strand
Strand 2	C	226	228	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	210	first strand
Strand 2	C	213	217	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	592	594	first strand
Strand 2	C	627	629	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	635	639	first strand
Strand 2	C	643	648	anti-parallel
Strand 3	C	651	657	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q9S

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q9S