Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q9Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Q9Z entry

There is 1 chain in PDB entry 9Q9Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 330SER 1364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9Q9Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
341 347Right-handed alpha
Helix 2
AA2
A
364 395Right-handed alpha
Helix 3
AA3
A
473 479Right-handed alpha
Helix 4
AA4
A
487 495Right-handed alpha
Helix 5
AA5
A
511 525Right-handed alpha
Helix 6
AA6
A
532 537Right-handed alpha
Helix 7
AA7
A
546 550Right-handed 310
Helix 8
AA8
A
557 563Right-handed alpha
Helix 9
AA9
A
586 590Right-handed 310
Helix 10
AB1
A
599 612Right-handed alpha
Helix 11
AB2
A
625 639Right-handed alpha
Helix 12
AB3
A
639 644Right-handed alpha
Helix 13
AB4
A
658 670Right-handed alpha
Helix 14
AB5
A
689 692Right-handed 310
Helix 15
AB6
A
693 699Right-handed alpha
Helix 16
AB7
A
700 707Right-handed alpha
Helix 17
AB8
A
708 717Right-handed alpha
Helix 18
AB9
A
969 977Right-handed alpha
Helix 19
AC1
A
985 991Right-handed alpha
Helix 20
AC2
A
991 999Right-handed alpha
Helix 21
AC3
A
1007 1011Right-handed 310
Helix 22
AC4
A
1012 1020Right-handed alpha
Helix 23
AC5
A
1042 1049Right-handed alpha
Helix 24
AC6
A
1054 1062Right-handed alpha
Helix 25
AC7
A
1076 1084Right-handed alpha
Helix 26
AC8
A
1094 1100Right-handed 310
Helix 27
AC9
A
1130 1146Right-handed alpha
Helix 28
AD1
A
1150 1152Right-handed 310
Helix 29
AD2
A
1160 1170Right-handed alpha
Helix 30
AD3
A
1185 1188Right-handed 310
Helix 31
AD4
A
1213 1221Right-handed alpha
Helix 32
AD5
A
1233 1238Right-handed alpha
Helix 33
AD6
A
1240 1253Right-handed alpha
Helix 34
AD7
A
1276 1283Right-handed 310
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There are 6 sheets in PDB entry 9Q9Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 422first strand
Strand 2
A
425 431anti-parallel
Strand 3
A
481 486anti-parallel
Strand 4
A
465 471anti-parallel
Strand 5
A
453 456anti-parallel
Strand 6
A
503 508anti-parallel
Strand 7
A
408 422anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
554 555first strand
Strand 2
A
582 583anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
677 679first strand
Strand 2
A
980 984parallel
Strand 3
A
652 656parallel
Strand 4
A
1002 1005parallel
Strand 5
A
1026 1031parallel
Strand 6
A
614 618parallel
Strand 7
A
1067 1068parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1180 1183first strand
Strand 2
A
1154 1158parallel
Strand 3
A
1192 1198parallel
Strand 4
A
1224 1231parallel
Strand 5
A
1110 1113parallel
Strand 6
A
1256 1257parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1121first strand
Strand 2
A
1128 1129anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1260 1263first strand
Strand 2
A
1271 1274anti-parallel
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