Analysis of interatomic Contacts of Structural Units in PDB entry:
9QAX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QAX entry

There are 6 chains in PDB entry 9QAX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4ASP 1132
B
 G 26 G 333
L
 SER 19GLY 99
M
 GLU 36SER 125
N
 G 24 G 30
O
 SER 90LEU 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 9QAX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 15Right-handed alpha
Helix 2
AA2
A
16 18Right-handed 310
Helix 3
AA3
A
24 32Right-handed alpha
Helix 4
AA4
A
44 53Right-handed alpha
Helix 5
AA5
A
76 92Right-handed alpha
Helix 6
AA6
A
125 133Right-handed alpha
Helix 7
AA7
A
134 145Right-handed alpha
Helix 8
AA8
A
145 155Right-handed alpha
Helix 9
AA9
A
329 332Right-handed 310
Helix 10
AB1
A
345 350Right-handed alpha
Helix 11
AB2
A
353 366Right-handed alpha
Helix 12
AB3
A
383 388Right-handed alpha
Helix 13
AB4
A
389 402Right-handed alpha
Helix 14
AB5
A
404 413Right-handed alpha
Helix 15
AB6
A
445 454Right-handed alpha
Helix 16
AB7
A
457 473Right-handed alpha
Helix 17
AB8
A
474 479Right-handed alpha
Helix 18
AB9
A
480 497Right-handed alpha
Helix 19
AC1
A
505 509Right-handed alpha
Helix 20
AC2
A
517 521Right-handed 310
Helix 21
AC3
A
530 551Right-handed alpha
Helix 22
AC4
A
551 560Right-handed alpha
Helix 23
AC5
A
578 597Right-handed alpha
Helix 24
AC6
A
602 612Right-handed alpha
Helix 25
AC7
A
653 672Right-handed alpha
Helix 26
AC8
A
673 676Right-handed 310
Helix 27
AC9
A
682 698Right-handed alpha
Helix 28
AD1
A
721 734Right-handed alpha
Helix 29
AD2
A
765 769Right-handed 310
Helix 30
AD3
A
772 784Right-handed alpha
Helix 31
AD4
A
802 814Right-handed alpha
Helix 32
AD5
A
837 854Right-handed alpha
Helix 33
AD6
A
854 859Right-handed alpha
Helix 34
AD7
A
876 890Right-handed alpha
Helix 35
AD8
A
946 950Right-handed 310
Helix 36
AD9
A
965 982Right-handed alpha
Helix 37
AE1
A
983 988Right-handed alpha
Helix 38
AE2
A
993 1017Right-handed alpha
Helix 39
AE3
A
1024 1028Right-handed 310
Helix 40
AE4
A
1029 1051Right-handed alpha
Helix 41
AE5
A
1066 1085Right-handed alpha
Helix 42
AE6
A
1085 1107Right-handed alpha
Helix 43
AE7
A
1109 1119Right-handed alpha
Helix 44
AE8
L
30 38Right-handed alpha
Helix 45
AE9
L
46 73Right-handed alpha
Helix 46
AF1
L
80 91Right-handed alpha
Helix 47
AF2
L
91 99Right-handed alpha
Helix 48
AF3
M
40 50Right-handed alpha
Helix 49
AF4
M
56 86Right-handed alpha
Helix 50
AF5
M
91 103Right-handed alpha
Helix 51
AF6
M
107 125Right-handed alpha
Helix 52
AF7
O
98 104Right-handed alpha
Helix 53
AF8
O
158 164Right-handed alpha
Helix 54
AF9
O
227 238Right-handed alpha
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There are 9 sheets in PDB entry 9QAX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
54 57anti-parallel
Strand 3
A
157 162anti-parallel
Strand 4
A
166 169anti-parallel
Strand 5
A
789 796parallel
Strand 6
A
738 749anti-parallel
Strand 7
A
755 764anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
54 57anti-parallel
Strand 3
A
157 162anti-parallel
Strand 4
A
166 169anti-parallel
Strand 5
A
789 796parallel
Strand 6
A
738 749anti-parallel
Strand 7
A
800 801anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
119 121anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 327first strand
Strand 2
A
502 504anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 564first strand
Strand 2
A
574 577anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
599 600first strand
Strand 2
A
823 826anti-parallel
Strand 3
A
816 820anti-parallel
Strand 4
A
617 626parallel
Strand 5
A
629 636anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
679 680first strand
Strand 2
A
862 866parallel
Strand 3
A
869 873anti-parallel
Strand 4
A
709 712anti-parallel
Strand 5
A
904 905anti-parallel
Strand 6
A
920 921parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
927 930first strand
Strand 2
A
933 936anti-parallel
Strand 3
A
942 944anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
181 184first strand
Strand 2
O
113 122anti-parallel
Strand 3
O
142 147anti-parallel
Strand 4
O
152 157anti-parallel
Strand 5
O
203 206parallel
Strand 6
O
189 190anti-parallel
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