Analysis of interatomic Contacts of Structural Units in PDB entry:
9QB5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QB5 entry

There are 2 chains in PDB entry 9QB5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 28ALA 343
B
 TYR 34ALA 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9QB5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 98Right-handed alpha
Helix 2
AA2
A
134 140Right-handed alpha
Helix 3
AA3
A
147 167Right-handed alpha
Helix 4
AA4
A
178 180Right-handed 310
Helix 5
AA5
A
204 209Right-handed alpha
Helix 6
AA6
A
209 221Right-handed alpha
Helix 7
AA7
A
222 226Right-handed 310
Helix 8
AA8
A
227 232Right-handed alpha
Helix 9
AA9
A
241 258Right-handed alpha
Helix 10
AB1
A
265 272Right-handed alpha
Helix 11
AB2
A
283 294Right-handed alpha
Helix 12
AB3
A
303 316Right-handed alpha
Helix 13
AB4
A
338 342Right-handed 310
Helix 14
AB5
B
80 98Right-handed alpha
Helix 15
AB6
B
134 140Right-handed alpha
Helix 16
AB7
B
147 167Right-handed alpha
Helix 17
AB8
B
178 180Right-handed 310
Helix 18
AB9
B
204 209Right-handed alpha
Helix 19
AC1
B
209 221Right-handed alpha
Helix 20
AC2
B
222 226Right-handed 310
Helix 21
AC3
B
227 232Right-handed alpha
Helix 22
AC4
B
241 258Right-handed alpha
Helix 23
AC5
B
265 272Right-handed alpha
Helix 24
AC6
B
283 294Right-handed alpha
Helix 25
AC7
B
303 316Right-handed alpha
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There are 5 sheets in PDB entry 9QB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
44 55anti-parallel
Strand 3
A
58 65anti-parallel
Strand 4
A
70 78anti-parallel
Strand 5
A
119 127anti-parallel
Strand 6
A
106 115anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
182 184anti-parallel
Strand 3
A
190 192anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
44 55anti-parallel
Strand 3
B
58 65anti-parallel
Strand 4
B
70 78anti-parallel
Strand 5
B
119 127anti-parallel
Strand 6
B
106 115anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
182 184anti-parallel
Strand 3
B
190 192anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 276first strand
Strand 2
B
337 338parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il