Analysis of interatomic Contacts of Structural Units in PDB entry:
9QB8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QB8 entry

There is 1 chain in PDB entry 9QB8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 237	ASN 3223

There are 93 helices in PDB entry 9QB8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	241	257	Right-handed alpha
Helix 2	AA2	A	263	283	Right-handed alpha
Helix 3	AA3	A	287	308	Right-handed alpha
Helix 4	AA4	A	325	340	Right-handed alpha
Helix 5	AA5	A	350	354	Right-handed 310
Helix 6	AA6	A	355	379	Right-handed alpha
Helix 7	AA7	A	384	398	Right-handed alpha
Helix 8	AA8	A	403	419	Right-handed alpha
Helix 9	AA9	A	422	451	Right-handed alpha
Helix 10	AB1	A	457	469	Right-handed alpha
Helix 11	AB2	A	472	502	Right-handed alpha
Helix 12	AB3	A	524	530	Right-handed alpha
Helix 13	AB4	A	542	551	Right-handed alpha
Helix 14	AB5	A	565	576	Right-handed alpha
Helix 15	AB6	A	579	584	Right-handed 310
Helix 16	AB7	A	585	601	Right-handed alpha
Helix 17	AB8	A	604	608	Right-handed 310
Helix 18	AB9	A	614	629	Right-handed alpha
Helix 19	AC1	A	630	631	Right-handed 310
Helix 20	AC2	A	632	637	Right-handed 310
Helix 21	AC3	A	678	700	Right-handed alpha
Helix 22	AC4	A	718	732	Right-handed alpha
Helix 23	AC5	A	756	772	Right-handed alpha
Helix 24	AC6	A	773	777	Right-handed 310
Helix 25	AC7	A	818	823	Right-handed alpha
Helix 26	AC8	A	842	846	Right-handed 310
Helix 27	AC9	A	855	860	Right-handed alpha
Helix 28	AD1	A	864	888	Right-handed alpha
Helix 29	AD2	A	892	909	Right-handed alpha
Helix 30	AD3	A	913	933	Right-handed alpha
Helix 31	AD4	A	952	966	Right-handed alpha
Helix 32	AD5	A	976	994	Right-handed alpha
Helix 33	AD6	A	1120	1139	Right-handed alpha
Helix 34	AD7	A	1151	1153	Right-handed 310
Helix 35	AD8	A	1158	1167	Right-handed alpha
Helix 36	AD9	A	1172	1184	Right-handed alpha
Helix 37	AE1	A	1200	1209	Right-handed alpha
Helix 38	AE2	A	1215	1229	Right-handed alpha
Helix 39	AE3	A	1237	1246	Right-handed alpha
Helix 40	AE4	A	1248	1252	Right-handed 310
Helix 41	AE5	A	1289	1311	Right-handed alpha
Helix 42	AE6	A	1315	1323	Right-handed alpha
Helix 43	AE7	A	1326	1332	Right-handed 310
Helix 44	AE8	A	1333	1347	Right-handed alpha
Helix 45	AE9	A	1351	1361	Right-handed alpha
Helix 46	AF1	A	1364	1377	Right-handed alpha
Helix 47	AF2	A	1379	1388	Right-handed alpha
Helix 48	AF3	A	1389	1391	Right-handed 310
Helix 49	AF4	A	1442	1460	Right-handed alpha
Helix 50	AF5	A	1476	1479	Right-handed 310
Helix 51	AF6	A	1480	1490	Right-handed alpha
Helix 52	AF7	A	1492	1515	Right-handed alpha
Helix 53	AF8	A	1521	1547	Right-handed alpha
Helix 54	AF9	A	1558	1568	Right-handed alpha
Helix 55	AG1	A	1606	1621	Right-handed alpha
Helix 56	AG2	A	1621	1629	Right-handed alpha
Helix 57	AG3	A	1634	1639	Right-handed alpha
Helix 58	AG4	A	1647	1654	Right-handed alpha
Helix 59	AG5	A	1668	1676	Right-handed alpha
Helix 60	AG6	A	1689	1695	Right-handed alpha
Helix 61	AG7	A	1719	1730	Right-handed alpha
Helix 62	AG8	A	1733	1748	Right-handed alpha
Helix 63	AG9	A	1768	1799	Right-handed alpha
Helix 64	AH1	A	1840	1856	Right-handed alpha
Helix 65	AH2	A	1864	1885	Right-handed alpha
Helix 66	AH3	A	1898	1920	Right-handed alpha
Helix 67	AH4	A	1928	1944	Right-handed alpha
Helix 68	AH5	A	1945	1961	Right-handed alpha
Helix 69	AH6	A	1964	1982	Right-handed alpha
Helix 70	AH7	A	1985	2003	Right-handed alpha
Helix 71	AH8	A	2004	2006	Right-handed 310
Helix 72	AH9	A	2028	2038	Right-handed alpha
Helix 73	AI1	A	2041	2059	Right-handed alpha
Helix 74	AI2	A	2111	2120	Right-handed alpha
Helix 75	AI3	A	2127	2131	Right-handed 310
Helix 76	AI4	A	2222	2232	Right-handed alpha
Helix 77	AI5	A	2379	2381	Right-handed 310
Helix 78	AI6	A	2406	2413	Right-handed 310
Helix 79	AI7	A	2444	2452	Right-handed alpha
Helix 80	AI8	A	2458	2470	Right-handed alpha
Helix 81	AI9	A	2609	2617	Right-handed alpha
Helix 82	AJ1	A	2742	2748	Right-handed alpha
Helix 83	AJ2	A	2776	2787	Right-handed alpha
Helix 84	AJ3	A	2823	2828	Right-handed 310
Helix 85	AJ4	A	2830	2844	Right-handed alpha
Helix 86	AJ5	A	2845	2849	Right-handed 310
Helix 87	AJ6	A	2853	2856	Right-handed 310
Helix 88	AJ7	A	2868	2884	Right-handed alpha
Helix 89	AJ8	A	2979	2983	Right-handed 310
Helix 90	AJ9	A	3056	3070	Right-handed alpha
Helix 91	AK1	A	3072	3086	Right-handed alpha
Helix 92	AK2	A	3095	3102	Right-handed alpha
Helix 93	AK3	A	3190	3195	Right-handed 310

There are 30 sheets in PDB entry 9QB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	311	first strand
Strand 2	A	643	645	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	510	first strand
Strand 2	A	344	349	parallel
Strand 3	A	315	319	parallel
Strand 4	A	553	556	parallel
Strand 5	A	661	673	anti-parallel
Strand 6	A	651	658	anti-parallel
Strand 7	A	789	790	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	562	first strand
Strand 2	A	811	812	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	779	780	first strand
Strand 2	A	783	784	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	935	936	first strand
Strand 2	A	1260	1261	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1145	1149	first strand
Strand 2	A	970	975	parallel
Strand 3	A	940	943	parallel
Strand 4	A	1188	1191	parallel
Strand 5	A	1274	1282	anti-parallel
Strand 6	A	1267	1271	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1196	1197	first strand
Strand 2	A	1403	1404	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1464	1466	first strand
Strand 2	A	1600	1604	anti-parallel
Strand 3	A	1592	1596	anti-parallel
Strand 4	A	1582	1585	anti-parallel
Strand 5	A	1574	1577	anti-parallel
Strand 6	A	1640	1643	anti-parallel
Strand 7	A	1553	1556	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1679	1682	first strand
Strand 2	A	1685	1688	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1697	1699	first strand
Strand 2	A	1716	1718	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1810	1817	first strand
Strand 2	A	1822	1827	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2062	2064	first strand
Strand 2	A	2069	2071	anti-parallel
Strand 3	A	2154	2157	parallel
Strand 4	A	2210	2214	parallel
Strand 5	A	2246	2249	parallel
Strand 6	A	2268	2270	parallel
Strand 7	A	2312	2314	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2091	2096	first strand
Strand 2	A	2078	2084	anti-parallel
Strand 3	A	2200	2204	parallel
Strand 4	A	2236	2240	parallel
Strand 5	A	2254	2259	parallel
Strand 6	A	2298	2308	parallel
Strand 7	A	2288	2295	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2098	2100	first strand
Strand 2	A	2162	2166	parallel
Strand 3	A	2194	2198	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2168	2172	first strand
Strand 2	A	2177	2181	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2281	2283	first strand
Strand 2	A	2321	2324	parallel
Strand 3	A	2339	2343	parallel
Strand 4	A	2360	2364	parallel
Strand 5	A	2403	2404	parallel

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There are 15 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2330	2333	first strand
Strand 2	A	2346	2351	parallel
Strand 3	A	2368	2374	parallel
Strand 4	A	2417	2420	parallel
Strand 5	A	2425	2432	anti-parallel
Strand 6	A	2435	2443	anti-parallel
Strand 7	A	2473	2478	parallel
Strand 8	A	2484	2489	anti-parallel
Strand 9	A	2494	2499	anti-parallel
Strand 10	A	2515	2519	parallel
Strand 11	A	2539	2543	parallel
Strand 12	A	2582	2589	parallel
Strand 13	A	2571	2577	anti-parallel
Strand 14	A	2562	2568	anti-parallel
Strand 15	A	2624	2628	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2383	2384	first strand
Strand 2	A	2393	2394	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2525	2527	first strand
Strand 2	A	2552	2554	parallel
Strand 3	A	2599	2601	parallel
Strand 4	A	2607	2608	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2637	2640	first strand
Strand 2	A	2659	2665	parallel
Strand 3	A	2709	2715	anti-parallel
Strand 4	A	2683	2686	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2645	2646	first strand
Strand 2	A	2720	2728	anti-parallel
Strand 3	A	2649	2651	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2645	2646	first strand
Strand 2	A	2720	2728	anti-parallel
Strand 3	A	2672	2680	anti-parallel
Strand 4	A	2702	2704	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2731	2733	first strand
Strand 2	A	2751	2754	parallel
Strand 3	A	2813	2817	parallel
Strand 4	A	2796	2801	anti-parallel
Strand 5	A	2791	2793	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2858	2861	first strand
Strand 2	A	2864	2867	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2910	2912	first strand
Strand 2	A	2972	2976	parallel
Strand 3	A	2957	2961	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2935	2938	first strand
Strand 2	A	2988	2994	parallel
Strand 3	A	3002	3009	anti-parallel
Strand 4	A	3012	3018	anti-parallel
Strand 5	A	3031	3033	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2947	2950	first strand
Strand 2	A	3043	3046	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3104	3110	first strand
Strand 2	A	3151	3157	anti-parallel
Strand 3	A	3197	3202	parallel
Strand 4	A	3186	3189	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3123	3125	first strand
Strand 2	A	3182	3184	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3132	3134	first strand
Strand 2	A	3175	3177	anti-parallel
Strand 3	A	3164	3165	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QB8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QB8