Analysis of interatomic Contacts of Structural Units in PDB entry:
9QBQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QBQ entry

There are 4 chains in PDB entry 9QBQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	LEU 437
B	THR 2	THR 482
C	THR 6	LEU 437
D	MET 1	THR 482

There are 53 helices in PDB entry 9QBQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	25	Right-handed alpha
Helix 2	AA2	A	89	93	Right-handed 310
Helix 3	AA3	A	137	145	Right-handed alpha
Helix 4	AA4	A	188	197	Right-handed alpha
Helix 5	AA5	A	218	227	Right-handed 310
Helix 6	AA6	A	229	233	Right-handed 310
Helix 7	AA7	A	238	243	Right-handed alpha
Helix 8	AA8	A	246	265	Right-handed alpha
Helix 9	AA9	A	273	275	Right-handed 310
Helix 10	AB1	A	356	364	Right-handed alpha
Helix 11	AB2	A	368	387	Right-handed alpha
Helix 12	AB3	A	418	426	Right-handed alpha
Helix 13	AB4	A	428	433	Right-handed 310
Helix 14	AB5	B	16	18	Right-handed 310
Helix 15	AB6	B	23	31	Right-handed alpha
Helix 16	AB7	B	49	66	Right-handed alpha
Helix 17	AB8	B	71	75	Right-handed 310
Helix 18	AB9	B	105	114	Right-handed alpha
Helix 19	AC1	B	117	138	Right-handed alpha
Helix 20	AC2	B	151	159	Right-handed alpha
Helix 21	AC3	B	179	188	Right-handed alpha
Helix 22	AC4	B	224	240	Right-handed alpha
Helix 23	AC5	B	305	323	Right-handed alpha
Helix 24	AC6	B	340	355	Right-handed alpha
Helix 25	AC7	B	426	438	Right-handed alpha
Helix 26	AC8	B	452	466	Right-handed alpha
Helix 27	AC9	B	477	482	Right-handed alpha
Helix 28	AD1	C	7	27	Right-handed alpha
Helix 29	AD2	C	136	138	Right-handed 310
Helix 30	AD3	C	139	146	Right-handed alpha
Helix 31	AD4	C	188	200	Right-handed alpha
Helix 32	AD5	C	229	233	Right-handed 310
Helix 33	AD6	C	239	241	Right-handed 310
Helix 34	AD7	C	246	265	Right-handed alpha
Helix 35	AD8	C	273	276	Right-handed 310
Helix 36	AD9	C	359	366	Right-handed alpha
Helix 37	AE1	C	368	388	Right-handed alpha
Helix 38	AE2	C	418	426	Right-handed alpha
Helix 39	AE3	C	427	433	Right-handed 310
Helix 40	AE4	D	16	18	Right-handed 310
Helix 41	AE5	D	23	32	Right-handed alpha
Helix 42	AE6	D	49	66	Right-handed alpha
Helix 43	AE7	D	71	75	Right-handed 310
Helix 44	AE8	D	105	113	Right-handed alpha
Helix 45	AE9	D	117	138	Right-handed alpha
Helix 46	AF1	D	151	159	Right-handed alpha
Helix 47	AF2	D	179	188	Right-handed alpha
Helix 48	AF3	D	224	240	Right-handed alpha
Helix 49	AF4	D	305	324	Right-handed alpha
Helix 50	AF5	D	340	355	Right-handed alpha
Helix 51	AF6	D	426	438	Right-handed alpha
Helix 52	AF7	D	452	466	Right-handed alpha
Helix 53	AF8	D	477	481	Right-handed 310

There are 24 sheets in PDB entry 9QBQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	40	48	anti-parallel
Strand 3	A	53	64	anti-parallel
Strand 4	A	98	102	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	413	first strand
Strand 2	A	164	168	anti-parallel
Strand 3	B	372	374	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	272	first strand
Strand 2	A	277	280	anti-parallel
Strand 3	A	318	328	anti-parallel
Strand 4	A	335	348	anti-parallel
Strand 5	A	351	352	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	295	first strand
Strand 2	A	298	308	anti-parallel
Strand 3	A	318	328	anti-parallel
Strand 4	A	335	348	anti-parallel
Strand 5	A	170	174	anti-parallel
Strand 6	A	404	407	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	212	215	anti-parallel
Strand 3	A	178	183	anti-parallel
Strand 4	A	234	237	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	384	387	anti-parallel
Strand 3	B	392	394	anti-parallel
Strand 4	B	415	419	anti-parallel
Strand 5	B	358	365	anti-parallel
Strand 6	B	330	335	parallel
Strand 7	B	255	264	parallel
Strand 8	B	272	279	anti-parallel
Strand 9	B	285	292	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	13	14	anti-parallel
Strand 3	B	245	246	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	41	48	parallel
Strand 3	B	101	103	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	41	48	parallel
Strand 3	B	145	149	parallel
Strand 4	B	195	197	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	162	first strand
Strand 2	B	211	212	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	297	first strand
Strand 2	B	300	303	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	36	first strand
Strand 2	C	39	47	anti-parallel
Strand 3	C	54	66	anti-parallel
Strand 4	C	98	104	parallel
Strand 5	C	109	114	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	36	first strand
Strand 2	C	39	47	anti-parallel
Strand 3	C	54	66	anti-parallel
Strand 4	C	148	149	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	81	first strand
Strand 2	C	126	129	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	413	first strand
Strand 2	C	164	168	anti-parallel
Strand 3	D	372	374	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	272	first strand
Strand 2	C	277	280	anti-parallel
Strand 3	C	318	330	anti-parallel
Strand 4	C	298	308	anti-parallel
Strand 5	C	289	295	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	272	first strand
Strand 2	C	277	280	anti-parallel
Strand 3	C	318	330	anti-parallel
Strand 4	C	335	346	anti-parallel
Strand 5	C	171	174	anti-parallel
Strand 6	C	404	406	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	209	first strand
Strand 2	C	212	215	anti-parallel
Strand 3	C	178	183	anti-parallel
Strand 4	C	234	237	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	384	388	anti-parallel
Strand 3	D	391	394	anti-parallel
Strand 4	D	415	419	anti-parallel
Strand 5	D	358	365	anti-parallel
Strand 6	D	330	335	parallel
Strand 7	D	255	264	parallel
Strand 8	D	272	279	anti-parallel
Strand 9	D	285	292	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	13	14	anti-parallel
Strand 3	D	245	246	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	41	48	parallel
Strand 3	D	101	103	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	41	48	parallel
Strand 3	D	145	149	parallel
Strand 4	D	195	198	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	162	first strand
Strand 2	D	211	212	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	297	first strand
Strand 2	D	300	303	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QBQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QBQ