Analysis of interatomic Contacts of Structural Units in PDB entry:
9QC7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QC7 entry

There are 2 chains in PDB entry 9QC7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 3	GLU 1292
B	ASN 2	LYS 1195

There are 69 helices in PDB entry 9QC7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	29	Right-handed 310
Helix 2	AA2	A	56	61	Right-handed 310
Helix 3	AA3	A	82	101	Right-handed alpha
Helix 4	AA4	A	103	116	Right-handed alpha
Helix 5	AA5	A	224	242	Right-handed alpha
Helix 6	AA6	A	266	274	Right-handed alpha
Helix 7	AA7	A	276	281	Right-handed 310
Helix 8	AA8	A	282	305	Right-handed alpha
Helix 9	AA9	A	317	329	Right-handed alpha
Helix 10	AB1	A	342	356	Right-handed alpha
Helix 11	AB2	A	358	367	Right-handed alpha
Helix 12	AB3	A	407	414	Right-handed 310
Helix 13	AB4	A	426	428	Right-handed 310
Helix 14	AB5	A	453	455	Right-handed 310
Helix 15	AB6	A	460	464	Right-handed 310
Helix 16	AB7	A	466	470	Right-handed 310
Helix 17	AB8	A	488	495	Right-handed alpha
Helix 18	AB9	A	537	544	Right-handed alpha
Helix 19	AC1	A	559	566	Right-handed alpha
Helix 20	AC2	A	575	583	Right-handed alpha
Helix 21	AC3	A	590	606	Right-handed alpha
Helix 22	AC4	A	624	630	Right-handed alpha
Helix 23	AC5	A	639	648	Right-handed alpha
Helix 24	AC6	A	649	652	Right-handed 310
Helix 25	AC7	A	675	709	Right-handed alpha
Helix 26	AC8	A	709	742	Right-handed alpha
Helix 27	AC9	A	743	748	Right-handed alpha
Helix 28	AD1	A	753	788	Right-handed alpha
Helix 29	AD2	A	788	814	Right-handed alpha
Helix 30	AD3	A	815	819	Right-handed 310
Helix 31	AD4	A	821	833	Right-handed alpha
Helix 32	AD5	A	840	844	Right-handed 310
Helix 33	AD6	A	942	949	Right-handed alpha
Helix 34	AD7	A	1068	1081	Right-handed alpha
Helix 35	AD8	A	1105	1107	Right-handed 310
Helix 36	AD9	A	1263	1268	Right-handed alpha
Helix 37	AE1	B	71	91	Right-handed alpha
Helix 38	AE2	B	92	105	Right-handed alpha
Helix 39	AE3	B	188	192	Right-handed 310
Helix 40	AE4	B	217	235	Right-handed alpha
Helix 41	AE5	B	262	269	Right-handed alpha
Helix 42	AE6	B	271	276	Right-handed 310
Helix 43	AE7	B	285	306	Right-handed alpha
Helix 44	AE8	B	316	326	Right-handed alpha
Helix 45	AE9	B	327	334	Right-handed alpha
Helix 46	AF1	B	335	344	Right-handed alpha
Helix 47	AF2	B	354	359	Right-handed alpha
Helix 48	AF3	B	379	384	Right-handed alpha
Helix 49	AF4	B	389	395	Right-handed 310
Helix 50	AF5	B	430	434	Right-handed 310
Helix 51	AF6	B	458	464	Right-handed alpha
Helix 52	AF7	B	499	506	Right-handed alpha
Helix 53	AF8	B	519	526	Right-handed alpha
Helix 54	AF9	B	536	545	Right-handed alpha
Helix 55	AG1	B	554	574	Right-handed alpha
Helix 56	AG2	B	591	597	Right-handed alpha
Helix 57	AG3	B	604	613	Right-handed alpha
Helix 58	AG4	B	614	617	Right-handed 310
Helix 59	AG5	B	643	645	Right-handed 310
Helix 60	AG6	B	646	676	Right-handed alpha
Helix 61	AG7	B	676	710	Right-handed alpha
Helix 62	AG8	B	715	759	Right-handed alpha
Helix 63	AG9	B	759	786	Right-handed alpha
Helix 64	AH1	B	790	801	Right-handed alpha
Helix 65	AH2	B	812	821	Right-handed alpha
Helix 66	AH3	B	822	831	Right-handed alpha
Helix 67	AH4	B	891	894	Right-handed 310
Helix 68	AH5	B	1024	1037	Right-handed alpha
Helix 69	AH6	B	1186	1190	Right-handed 310

There are 32 sheets in PDB entry 9QC7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	192	195	anti-parallel
Strand 3	A	159	163	parallel
Strand 4	A	44	50	parallel
Strand 5	A	35	41	anti-parallel
Strand 6	A	20	24	anti-parallel
Strand 7	A	138	142	anti-parallel
Strand 8	A	152	156	anti-parallel
Strand 9	A	508	509	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	525	526	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	74	first strand
Strand 2	A	430	431	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	309	310	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	178	first strand
Strand 2	A	181	182	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	200	204	anti-parallel
Strand 3	A	379	384	anti-parallel
Strand 4	A	422	424	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	333	first strand
Strand 2	A	339	340	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	451	first strand
Strand 2	A	434	438	anti-parallel
Strand 3	A	528	532	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	474	first strand
Strand 2	A	667	669	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	557	first strand
Strand 2	A	569	571	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	610	611	first strand
Strand 2	A	620	621	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	864	866	first strand
Strand 2	A	1054	1063	anti-parallel
Strand 3	A	900	903	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	864	866	first strand
Strand 2	A	1054	1063	anti-parallel
Strand 3	A	927	934	anti-parallel
Strand 4	A	1004	1010	anti-parallel
Strand 5	A	1014	1019	anti-parallel
Strand 6	A	1022	1028	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	870	871	first strand
Strand 2	A	876	877	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	885	888	first strand
Strand 2	A	910	913	anti-parallel
Strand 3	A	1040	1047	anti-parallel
Strand 4	A	950	958	anti-parallel
Strand 5	A	961	968	anti-parallel
Strand 6	A	971	977	anti-parallel
Strand 7	A	983	989	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1191	1193	first strand
Strand 2	A	1255	1261	anti-parallel
Strand 3	A	1235	1244	anti-parallel
Strand 4	A	1223	1227	anti-parallel
Strand 5	A	1209	1212	anti-parallel
Strand 6	A	1166	1174	anti-parallel
Strand 7	A	1177	1184	anti-parallel
Strand 8	A	1205	1206	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1195	1198	first strand
Strand 2	A	1177	1184	anti-parallel
Strand 3	A	1166	1174	anti-parallel
Strand 4	A	1145	1150	anti-parallel
Strand 5	A	1099	1103	anti-parallel
Strand 6	A	1281	1284	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1109	1113	first strand
Strand 2	A	1120	1124	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	22	first strand
Strand 2	B	29	36	anti-parallel
Strand 3	B	39	45	anti-parallel
Strand 4	B	169	173	parallel
Strand 5	B	199	201	parallel
Strand 6	B	183	185	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	164	165	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	215	first strand
Strand 2	B	207	211	anti-parallel
Strand 3	B	363	365	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	248	first strand
Strand 2	B	257	261	anti-parallel
Strand 3	B	425	426	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	373	first strand
Strand 2	B	376	377	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	418	first strand
Strand 2	B	401	406	anti-parallel
Strand 3	B	491	495	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	517	first strand
Strand 2	B	531	533	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	576	581	first strand
Strand 2	B	584	589	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	847	852	first strand
Strand 2	B	835	844	anti-parallel
Strand 3	B	1011	1019	anti-parallel
Strand 4	B	875	879	anti-parallel
Strand 5	B	867	870	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	847	852	first strand
Strand 2	B	835	844	anti-parallel
Strand 3	B	1011	1019	anti-parallel
Strand 4	B	901	909	anti-parallel
Strand 5	B	962	970	anti-parallel
Strand 6	B	975	980	anti-parallel
Strand 7	B	983	989	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	859	862	first strand
Strand 2	B	885	889	anti-parallel
Strand 3	B	1001	1005	anti-parallel
Strand 4	B	917	921	anti-parallel
Strand 5	B	928	933	anti-parallel
Strand 6	B	938	943	anti-parallel
Strand 7	B	949	954	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1076	1080	first strand
Strand 2	B	1062	1071	anti-parallel
Strand 3	B	1057	1059	anti-parallel
Strand 4	B	1192	1194	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1093	1096	first strand
Strand 2	B	1110	1115	anti-parallel
Strand 3	B	1121	1125	anti-parallel
Strand 4	B	1132	1135	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1093	1096	first strand
Strand 2	B	1110	1115	anti-parallel
Strand 3	B	1144	1149	anti-parallel
Strand 4	B	1152	1160	anti-parallel
Strand 5	B	1163	1167	anti-parallel
Strand 6	B	1177	1179	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QC7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QC7