Analysis of interatomic Contacts of Structural Units in PDB entry:
9QCV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QCV entry

There are 5 chains in PDB entry 9QCV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	MET 1	PRO 292
L	PRO 176	ASN 431
H	ALA 244	PRO 308
I	MET 1	GLU 284
J	LYS 10	PHE 346

There are 60 helices in PDB entry 9QCV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	45	58	Right-handed alpha
Helix 2	AA2	K	87	94	Right-handed alpha
Helix 3	AA3	K	100	121	Right-handed alpha
Helix 4	AA4	K	129	131	Right-handed 310
Helix 5	AA5	K	165	169	Right-handed 310
Helix 6	AA6	K	170	175	Right-handed alpha
Helix 7	AA7	K	182	199	Right-handed alpha
Helix 8	AA8	K	207	220	Right-handed alpha
Helix 9	AA9	K	229	233	Right-handed 310
Helix 10	AB1	K	256	267	Right-handed alpha
Helix 11	AB2	K	276	282	Right-handed alpha
Helix 12	AB3	K	283	287	Right-handed 310
Helix 13	AB4	L	178	193	Right-handed alpha
Helix 14	AB5	L	207	226	Right-handed alpha
Helix 15	AB6	L	228	244	Right-handed alpha
Helix 16	AB7	L	252	269	Right-handed alpha
Helix 17	AB8	L	274	281	Right-handed alpha
Helix 18	AB9	L	287	303	Right-handed alpha
Helix 19	AC1	L	310	319	Right-handed alpha
Helix 20	AC2	L	320	322	Right-handed 310
Helix 21	AC3	L	326	343	Right-handed alpha
Helix 22	AC4	L	351	367	Right-handed alpha
Helix 23	AC5	L	373	381	Right-handed alpha
Helix 24	AC6	L	383	400	Right-handed alpha
Helix 25	AC7	L	407	414	Right-handed alpha
Helix 26	AC8	L	415	419	Right-handed 310
Helix 27	AC9	H	270	275	Right-handed 310
Helix 28	AD1	H	279	285	Right-handed alpha
Helix 29	AD2	H	288	302	Right-handed alpha
Helix 30	AD3	I	1	4	Right-handed 310
Helix 31	AD4	I	5	11	Right-handed alpha
Helix 32	AD5	I	15	38	Right-handed alpha
Helix 33	AD6	I	49	70	Right-handed alpha
Helix 34	AD7	I	76	94	Right-handed alpha
Helix 35	AD8	I	100	116	Right-handed alpha
Helix 36	AD9	I	121	128	Right-handed alpha
Helix 37	AE1	I	132	154	Right-handed alpha
Helix 38	AE2	I	163	178	Right-handed alpha
Helix 39	AE3	I	183	186	Right-handed 310
Helix 40	AE4	I	187	201	Right-handed alpha
Helix 41	AE5	I	202	206	Right-handed 310
Helix 42	AE6	I	208	224	Right-handed alpha
Helix 43	AE7	I	228	234	Right-handed alpha
Helix 44	AE8	I	241	262	Right-handed alpha
Helix 45	AE9	I	266	281	Right-handed alpha
Helix 46	AF1	J	47	51	Right-handed 310
Helix 47	AF2	J	56	67	Right-handed alpha
Helix 48	AF3	J	98	104	Right-handed alpha
Helix 49	AF4	J	110	131	Right-handed alpha
Helix 50	AF5	J	139	141	Right-handed 310
Helix 51	AF6	J	175	179	Right-handed 310
Helix 52	AF7	J	180	185	Right-handed alpha
Helix 53	AF8	J	192	209	Right-handed alpha
Helix 54	AF9	J	217	230	Right-handed alpha
Helix 55	AG1	J	239	243	Right-handed 310
Helix 56	AG2	J	256	261	Right-handed alpha
Helix 57	AG3	J	265	276	Right-handed alpha
Helix 58	AG4	J	285	291	Right-handed alpha
Helix 59	AG5	J	292	297	Right-handed alpha
Helix 60	AG6	J	303	307	Right-handed 310

There are 6 sheets in PDB entry 9QCV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	12	first strand
Strand 2	K	17	23	anti-parallel
Strand 3	K	29	35	anti-parallel
Strand 4	K	76	81	anti-parallel
Strand 5	K	66	71	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	85	86	first strand
Strand 2	K	133	135	anti-parallel
Strand 3	K	141	143	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	123	124	first strand
Strand 2	K	150	151	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	16	20	first strand
Strand 2	J	24	30	anti-parallel
Strand 3	J	37	43	anti-parallel
Strand 4	J	88	92	anti-parallel
Strand 5	J	77	79	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	96	97	first strand
Strand 2	J	143	145	anti-parallel
Strand 3	J	152	153	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	133	134	first strand
Strand 2	J	160	161	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QCV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QCV