Analysis of interatomic Contacts of Structural Units in PDB entry:
9QD0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QD0 entry

There are 2 chains in PDB entry 9QD0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 147	ASN 687
A	THR 147	ASN 687

There are 9 helices in PDB entry 9QD0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	215	219	Right-handed alpha
Helix 2	AA2	B	363	372	Right-handed alpha
Helix 3	AA3	B	633	637	Right-handed 310
Helix 4	AA4	B	647	658	Right-handed alpha
Helix 5	AA5	B	662	666	Right-handed 310
Helix 6	AA6	A	215	219	Right-handed alpha
Helix 7	AA7	A	363	372	Right-handed alpha
Helix 8	AA8	A	374	378	Right-handed 310
Helix 9	AA9	A	647	658	Right-handed alpha

There are 20 sheets in PDB entry 9QD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	531	542	anti-parallel
Strand 3	B	546	555	anti-parallel
Strand 4	B	563	570	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	172	first strand
Strand 2	B	573	576	anti-parallel
Strand 3	B	582	584	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	202	first strand
Strand 2	B	207	214	anti-parallel
Strand 3	B	225	234	anti-parallel
Strand 4	B	242	252	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	265	first strand
Strand 2	B	268	274	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	303	307	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	A	642	643	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	315	first strand
Strand 2	B	398	402	parallel
Strand 3	B	381	389	anti-parallel
Strand 4	B	335	344	anti-parallel
Strand 5	B	319	324	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	315	first strand
Strand 2	B	398	402	parallel
Strand 3	B	381	389	anti-parallel
Strand 4	B	335	344	anti-parallel
Strand 5	B	330	332	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	419	first strand
Strand 2	B	424	429	anti-parallel
Strand 3	B	439	444	anti-parallel
Strand 4	B	450	454	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	487	first strand
Strand 2	B	495	500	anti-parallel
Strand 3	B	509	514	anti-parallel
Strand 4	B	519	524	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	668	670	first strand
Strand 2	B	673	677	anti-parallel
Strand 3	B	624	631	anti-parallel
Strand 4	B	613	619	anti-parallel
Strand 5	B	604	610	anti-parallel
Strand 6	A	277	278	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	643	first strand
Strand 2	A	280	282	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	531	542	anti-parallel
Strand 3	A	546	555	anti-parallel
Strand 4	A	563	570	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	172	first strand
Strand 2	A	573	577	anti-parallel
Strand 3	A	582	584	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	202	first strand
Strand 2	A	207	214	anti-parallel
Strand 3	A	225	234	anti-parallel
Strand 4	A	242	251	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	264	first strand
Strand 2	A	268	274	anti-parallel
Strand 3	A	292	298	anti-parallel
Strand 4	A	303	307	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	315	first strand
Strand 2	A	398	402	parallel
Strand 3	A	381	389	anti-parallel
Strand 4	A	335	344	anti-parallel
Strand 5	A	319	324	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	315	first strand
Strand 2	A	398	402	parallel
Strand 3	A	381	389	anti-parallel
Strand 4	A	335	344	anti-parallel
Strand 5	A	330	332	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	419	first strand
Strand 2	A	424	429	anti-parallel
Strand 3	A	439	444	anti-parallel
Strand 4	A	450	454	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	487	first strand
Strand 2	A	495	500	anti-parallel
Strand 3	A	509	514	anti-parallel
Strand 4	A	519	524	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	610	first strand
Strand 2	A	613	619	anti-parallel
Strand 3	A	624	629	anti-parallel
Strand 4	A	675	677	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QD0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QD0