Analysis of interatomic Contacts of Structural Units in PDB entry:
9QD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QD0 entry

There are 2 chains in PDB entry 9QD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
THR 147ASN 687
A
THR 147ASN 687
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 9QD0. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
215 219Right-handed alpha
Helix 2
AA2
B
363 372Right-handed alpha
Helix 3
AA3
B
633 637Right-handed 310
Helix 4
AA4
B
647 658Right-handed alpha
Helix 5
AA5
B
662 666Right-handed 310
Helix 6
AA6
A
215 219Right-handed alpha
Helix 7
AA7
A
363 372Right-handed alpha
Helix 8
AA8
A
374 378Right-handed 310
Helix 9
AA9
A
647 658Right-handed alpha
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There are 20 sheets in PDB entry 9QD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
154 155first strand
Strand 2
B
531 542anti-parallel
Strand 3
B
546 555anti-parallel
Strand 4
B
563 570anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
169 172first strand
Strand 2
B
573 576anti-parallel
Strand 3
B
582 584anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
194 202first strand
Strand 2
B
207 214anti-parallel
Strand 3
B
225 234anti-parallel
Strand 4
B
242 252anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
258 265first strand
Strand 2
B
268 274anti-parallel
Strand 3
B
293 298anti-parallel
Strand 4
B
303 307anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
280 281first strand
Strand 2
A
642 643anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
314 315first strand
Strand 2
B
398 402parallel
Strand 3
B
381 389anti-parallel
Strand 4
B
335 344anti-parallel
Strand 5
B
319 324anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
314 315first strand
Strand 2
B
398 402parallel
Strand 3
B
381 389anti-parallel
Strand 4
B
335 344anti-parallel
Strand 5
B
330 332anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
414 419first strand
Strand 2
B
424 429anti-parallel
Strand 3
B
439 444anti-parallel
Strand 4
B
450 454anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
485 487first strand
Strand 2
B
495 500anti-parallel
Strand 3
B
509 514anti-parallel
Strand 4
B
519 524anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
668 670first strand
Strand 2
B
673 677anti-parallel
Strand 3
B
624 631anti-parallel
Strand 4
B
613 619anti-parallel
Strand 5
B
604 610anti-parallel
Strand 6
A
277 278anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
641 643first strand
Strand 2
A
280 282anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
154 155first strand
Strand 2
A
531 542anti-parallel
Strand 3
A
546 555anti-parallel
Strand 4
A
563 570anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
168 172first strand
Strand 2
A
573 577anti-parallel
Strand 3
A
582 584anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
194 202first strand
Strand 2
A
207 214anti-parallel
Strand 3
A
225 234anti-parallel
Strand 4
A
242 251anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
258 264first strand
Strand 2
A
268 274anti-parallel
Strand 3
A
292 298anti-parallel
Strand 4
A
303 307anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
314 315first strand
Strand 2
A
398 402parallel
Strand 3
A
381 389anti-parallel
Strand 4
A
335 344anti-parallel
Strand 5
A
319 324anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
314 315first strand
Strand 2
A
398 402parallel
Strand 3
A
381 389anti-parallel
Strand 4
A
335 344anti-parallel
Strand 5
A
330 332anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
414 419first strand
Strand 2
A
424 429anti-parallel
Strand 3
A
439 444anti-parallel
Strand 4
A
450 454anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
485 487first strand
Strand 2
A
495 500anti-parallel
Strand 3
A
509 514anti-parallel
Strand 4
A
519 524anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
604 610first strand
Strand 2
A
613 619anti-parallel
Strand 3
A
624 629anti-parallel
Strand 4
A
675 677anti-parallel
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