Analysis of interatomic Contacts of Structural Units in PDB entry:
9QDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QDG entry

There are 2 chains in PDB entry 9QDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 36GLU 123
A
 ARG 3LEU 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9QDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
38 57Right-handed alpha
Helix 2
AA2
B
61 64Right-handed 310
Helix 3
AA3
B
65 75Right-handed alpha
Helix 4
AA4
B
81 89Right-handed alpha
Helix 5
AA5
B
96 105Right-handed alpha
Helix 6
AA6
B
112 116Right-handed 310
Helix 7
AA7
A
21 25Right-handed 310
Helix 8
AA8
A
39 45Right-handed alpha
Helix 9
AA9
A
62 66Right-handed 310
Helix 10
AB1
A
70 76Right-handed alpha
Helix 11
AB2
A
87 96Right-handed alpha
Helix 12
AB3
A
108 119Right-handed 310
Helix 13
AB4
A
126 138Right-handed alpha
Helix 14
AB5
A
144 165Right-handed alpha
Helix 15
AB6
A
179 190Right-handed alpha
Helix 16
AB7
A
191 197Right-handed 310
Helix 17
AB8
A
202 212Right-handed alpha
Helix 18
AB9
A
213 220Right-handed alpha
Helix 19
AC1
A
222 224Right-handed 310
Helix 20
AC2
A
235 242Right-handed alpha
Helix 21
AC3
A
260 270Right-handed alpha
Helix 22
AC4
A
273 277Right-handed 310
Helix 23
AC5
A
290 295Right-handed alpha
Helix 24
AC6
A
296 298Right-handed 310
Helix 25
AC7
A
300 316Right-handed alpha
Helix 26
AC8
A
324 328Right-handed 310
Helix 27
AC9
A
355 365Right-handed alpha
Helix 28
AD1
A
381 385Right-handed 310
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There are 4 sheets in PDB entry 9QDG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
9 11anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
81 83anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
101 106parallel
Strand 3
A
226 232parallel
Strand 4
A
256 259parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
372 376parallel
Strand 3
A
343 351parallel
Strand 4
A
333 340anti-parallel
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