Analysis of interatomic Contacts of Structural Units in PDB entry:
9QDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QDQ entry

There are 4 chains in PDB entry 9QDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 57GLN 853
B
 PRO 12ASN 569
C
 ASP 169PRO 218
D
 U 20 U 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 9QDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 102Right-handed alpha
Helix 2
AA2
A
161 165Right-handed 310
Helix 3
AA3
A
183 190Right-handed alpha
Helix 4
AA4
A
194 203Right-handed alpha
Helix 5
AA5
A
212 217Right-handed alpha
Helix 6
AA6
A
234 259Right-handed alpha
Helix 7
AA7
A
284 291Right-handed alpha
Helix 8
AA8
A
355 371Right-handed alpha
Helix 9
AA9
A
372 375Right-handed 310
Helix 10
AB1
A
376 384Right-handed alpha
Helix 11
AB2
A
410 421Right-handed alpha
Helix 12
AB3
A
435 452Right-handed alpha
Helix 13
AB4
A
461 475Right-handed alpha
Helix 14
AB5
A
494 497Right-handed 310
Helix 15
AB6
A
498 506Right-handed alpha
Helix 16
AB7
A
509 522Right-handed alpha
Helix 17
AB8
A
525 547Right-handed alpha
Helix 18
AB9
A
555 559Right-handed 310
Helix 19
AC1
A
573 577Right-handed 310
Helix 20
AC2
A
578 584Right-handed alpha
Helix 21
AC3
A
608 615Right-handed alpha
Helix 22
AC4
A
619 628Right-handed alpha
Helix 23
AC5
A
641 653Right-handed alpha
Helix 24
AC6
A
702 719Right-handed alpha
Helix 25
AC7
A
722 724Right-handed 310
Helix 26
AC8
A
732 746Right-handed alpha
Helix 27
AC9
A
750 756Right-handed alpha
Helix 28
AD1
A
763 766Right-handed 310
Helix 29
AD2
A
787 790Right-handed 310
Helix 30
AD3
A
791 800Right-handed alpha
Helix 31
AD4
A
811 816Right-handed alpha
Helix 32
AD5
A
818 831Right-handed alpha
Helix 33
AD6
B
15 29Right-handed alpha
Helix 34
AD7
B
30 33Right-handed 310
Helix 35
AD8
B
34 63Right-handed alpha
Helix 36
AD9
B
68 72Right-handed 310
Helix 37
AE1
B
74 88Right-handed alpha
Helix 38
AE2
B
88 105Right-handed alpha
Helix 39
AE3
B
111 148Right-handed alpha
Helix 40
AE4
B
155 162Right-handed alpha
Helix 41
AE5
B
187 215Right-handed alpha
Helix 42
AE6
B
221 224Right-handed 310
Helix 43
AE7
B
225 239Right-handed alpha
Helix 44
AE8
B
242 256Right-handed alpha
Helix 45
AE9
B
259 271Right-handed alpha
Helix 46
AF1
B
276 288Right-handed alpha
Helix 47
AF2
B
292 312Right-handed alpha
Helix 48
AF3
B
316 334Right-handed alpha
Helix 49
AF4
B
334 339Right-handed alpha
Helix 50
AF5
B
352 368Right-handed alpha
Helix 51
AF6
B
371 393Right-handed alpha
Helix 52
AF7
B
405 426Right-handed alpha
Helix 53
AF8
B
426 431Right-handed alpha
Helix 54
AF9
B
438 454Right-handed alpha
Helix 55
AG1
B
454 463Right-handed alpha
Helix 56
AG2
B
464 482Right-handed alpha
Helix 57
AG3
B
500 506Right-handed alpha
Helix 58
AG4
B
509 513Right-handed 310
Helix 59
AG5
B
521 528Right-handed alpha
Helix 60
AG6
B
530 536Right-handed alpha
Helix 61
AG7
B
540 544Right-handed 310
Helix 62
AG8
B
546 567Right-handed alpha
Helix 63
AG9
C
170 186Right-handed alpha
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There are 8 sheets in PDB entry 9QDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
74 76anti-parallel
Strand 3
A
107 109anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
133 137anti-parallel
Strand 3
A
166 167anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
173 174anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 271first strand
Strand 2
A
277 282anti-parallel
Strand 3
A
327 332anti-parallel
Strand 4
A
311 319anti-parallel
Strand 5
A
298 303anti-parallel
Strand 6
A
347 351anti-parallel
Strand 7
A
262 271anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
C
196 200parallel
Strand 3
C
187 190anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 481first strand
Strand 2
A
549 551parallel
Strand 3
A
455 458parallel
Strand 4
A
568 571parallel
Strand 5
A
592 596parallel
Strand 6
A
427 429parallel
Strand 7
A
632 633parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
636 637first strand
Strand 2
A
658 659parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
758 761first strand
Strand 2
A
726 730parallel
Strand 3
A
770 776parallel
Strand 4
A
802 810parallel
Strand 5
A
682 686parallel
Strand 6
A
834 836parallel
Strand 7
A
843 844anti-parallel
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