Analysis of interatomic Contacts of Structural Units in PDB entry:
9QE1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QE1 entry

There are 5 chains in PDB entry 9QE1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 1370
B	MET 1	PHE 1356
D	GLN 5	GLU 388
E	SER 124	ARG 495
J	ILE 9	LYS 116

There are119 helices in PDB entry 9QE1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	50	Right-handed alpha
Helix 2	AA2	A	51	56	Right-handed alpha
Helix 3	AA3	A	59	64	Right-handed alpha
Helix 4	AA4	A	72	79	Right-handed alpha
Helix 5	AA5	A	151	161	Right-handed alpha
Helix 6	AA6	A	168	180	Right-handed alpha
Helix 7	AA7	A	185	200	Right-handed alpha
Helix 8	AA8	A	202	207	Right-handed alpha
Helix 9	AA9	A	209	221	Right-handed alpha
Helix 10	AB1	A	225	332	Right-handed alpha
Helix 11	AB2	A	333	406	Right-handed alpha
Helix 12	AB3	A	408	419	Right-handed alpha
Helix 13	AB4	A	427	504	Right-handed alpha
Helix 14	AB5	A	510	523	Right-handed alpha
Helix 15	AB6	A	530	578	Right-handed alpha
Helix 16	AB7	A	587	601	Right-handed alpha
Helix 17	AB8	A	618	633	Right-handed alpha
Helix 18	AB9	A	634	636	Right-handed 310
Helix 19	AC1	A	662	665	Right-handed 310
Helix 20	AC2	A	678	689	Right-handed alpha
Helix 21	AC3	A	725	775	Right-handed alpha
Helix 22	AC4	A	778	827	Right-handed alpha
Helix 23	AC5	A	835	915	Right-handed alpha
Helix 24	AC6	A	916	987	Right-handed alpha
Helix 25	AC7	A	995	1003	Right-handed alpha
Helix 26	AC8	A	1003	1010	Right-handed alpha
Helix 27	AC9	A	1011	1031	Right-handed alpha
Helix 28	AD1	A	1032	1034	Right-handed 310
Helix 29	AD2	A	1045	1050	Right-handed 310
Helix 30	AD3	A	1056	1067	Right-handed alpha
Helix 31	AD4	A	1082	1098	Right-handed alpha
Helix 32	AD5	A	1102	1141	Right-handed alpha
Helix 33	AD6	A	1166	1176	Right-handed alpha
Helix 34	AD7	A	1177	1181	Right-handed 310
Helix 35	AD8	A	1182	1207	Right-handed alpha
Helix 36	AD9	A	1212	1221	Right-handed alpha
Helix 37	AE1	A	1222	1225	Right-handed 310
Helix 38	AE2	A	1244	1250	Right-handed alpha
Helix 39	AE3	A	1252	1274	Right-handed alpha
Helix 40	AE4	A	1296	1308	Right-handed alpha
Helix 41	AE5	A	1359	1370	Right-handed alpha
Helix 42	AE6	B	41	50	Right-handed alpha
Helix 43	AE7	B	51	56	Right-handed alpha
Helix 44	AE8	B	59	64	Right-handed alpha
Helix 45	AE9	B	72	79	Right-handed alpha
Helix 46	AF1	B	151	161	Right-handed alpha
Helix 47	AF2	B	168	180	Right-handed alpha
Helix 48	AF3	B	185	201	Right-handed alpha
Helix 49	AF4	B	209	221	Right-handed alpha
Helix 50	AF5	B	225	331	Right-handed alpha
Helix 51	AF6	B	334	406	Right-handed alpha
Helix 52	AF7	B	408	421	Right-handed alpha
Helix 53	AF8	B	427	503	Right-handed alpha
Helix 54	AF9	B	510	523	Right-handed alpha
Helix 55	AG1	B	530	579	Right-handed alpha
Helix 56	AG2	B	587	601	Right-handed alpha
Helix 57	AG3	B	618	633	Right-handed alpha
Helix 58	AG4	B	662	665	Right-handed 310
Helix 59	AG5	B	678	689	Right-handed alpha
Helix 60	AG6	B	725	774	Right-handed alpha
Helix 61	AG7	B	778	829	Right-handed alpha
Helix 62	AG8	B	835	915	Right-handed alpha
Helix 63	AG9	B	917	987	Right-handed alpha
Helix 64	AH1	B	995	1010	Right-handed alpha
Helix 65	AH2	B	1011	1027	Right-handed alpha
Helix 66	AH3	B	1028	1029	Right-handed 310
Helix 67	AH4	B	1030	1034	Right-handed 310
Helix 68	AH5	B	1045	1050	Right-handed 310
Helix 69	AH6	B	1053	1055	Right-handed 310
Helix 70	AH7	B	1056	1068	Right-handed alpha
Helix 71	AH8	B	1082	1112	Right-handed alpha
Helix 72	AH9	B	1116	1142	Right-handed alpha
Helix 73	AI1	B	1166	1175	Right-handed alpha
Helix 74	AI2	B	1182	1206	Right-handed alpha
Helix 75	AI3	B	1212	1221	Right-handed alpha
Helix 76	AI4	B	1222	1225	Right-handed 310
Helix 77	AI5	B	1244	1250	Right-handed alpha
Helix 78	AI6	B	1252	1274	Right-handed alpha
Helix 79	AI7	B	1296	1308	Right-handed alpha
Helix 80	AI8	D	10	23	Right-handed alpha
Helix 81	AI9	D	31	41	Right-handed alpha
Helix 82	AJ1	D	41	53	Right-handed alpha
Helix 83	AJ2	D	74	78	Right-handed 310
Helix 84	AJ3	D	84	99	Right-handed alpha
Helix 85	AJ4	D	109	120	Right-handed alpha
Helix 86	AJ5	D	130	147	Right-handed alpha
Helix 87	AJ6	D	157	162	Right-handed 310
Helix 88	AJ7	D	174	179	Right-handed 310
Helix 89	AJ8	D	186	190	Right-handed 310
Helix 90	AJ9	D	193	201	Right-handed alpha
Helix 91	AK1	D	207	220	Right-handed alpha
Helix 92	AK2	D	230	239	Right-handed alpha
Helix 93	AK3	D	239	251	Right-handed alpha
Helix 94	AK4	D	280	295	Right-handed alpha
Helix 95	AK5	D	311	326	Right-handed alpha
Helix 96	AK6	D	327	330	Right-handed 310
Helix 97	AK7	D	331	336	Right-handed alpha
Helix 98	AK8	D	338	353	Right-handed alpha
Helix 99	AK9	D	369	372	Right-handed 310
Helix 100	AL1	D	379	388	Right-handed alpha
Helix 101	AL2	E	128	146	Right-handed alpha
Helix 102	AL3	E	151	182	Right-handed alpha
Helix 103	AL4	E	182	189	Right-handed alpha
Helix 104	AL5	E	192	208	Right-handed alpha
Helix 105	AL6	E	208	226	Right-handed alpha
Helix 106	AL7	E	231	245	Right-handed alpha
Helix 107	AL8	E	254	275	Right-handed alpha
Helix 108	AL9	E	281	310	Right-handed alpha
Helix 109	AM1	E	314	327	Right-handed alpha
Helix 110	AM2	E	330	342	Right-handed alpha
Helix 111	AM3	E	393	418	Right-handed alpha
Helix 112	AM4	E	427	429	Right-handed 310
Helix 113	AM5	E	433	450	Right-handed alpha
Helix 114	AM6	J	10	16	Right-handed alpha
Helix 115	AM7	J	18	35	Right-handed alpha
Helix 116	AM8	J	41	52	Right-handed alpha
Helix 117	AM9	J	59	73	Right-handed alpha
Helix 118	AN1	J	87	93	Right-handed alpha
Helix 119	AN2	J	101	116	Right-handed alpha

There are 24 sheets in PDB entry 9QE1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	25	first strand
Strand 2	A	7	15	anti-parallel
Strand 3	A	88	99	anti-parallel
Strand 4	A	105	115	anti-parallel
Strand 5	A	119	127	anti-parallel
Strand 6	A	163	166	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1282	1285	first strand
Strand 2	A	1310	1315	parallel
Strand 3	A	31	35	parallel
Strand 4	A	1330	1334	parallel
Strand 5	A	1343	1346	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	141	first strand
Strand 2	A	148	149	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	606	first strand
Strand 2	A	638	639	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	611	613	first strand
Strand 2	A	667	669	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	650	652	first strand
Strand 2	B	711	714	anti-parallel
Strand 3	B	705	708	anti-parallel
Strand 4	B	698	700	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	700	first strand
Strand 2	A	706	708	anti-parallel
Strand 3	A	711	713	anti-parallel
Strand 4	B	650	652	anti-parallel
Strand 5	B	638	640	parallel
Strand 6	B	604	606	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1036	1040	first strand
Strand 2	A	1069	1076	anti-parallel
Strand 3	A	1079	1081	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1148	1156	first strand
Strand 2	A	1227	1235	anti-parallel
Strand 3	A	1241	1242	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	25	first strand
Strand 2	B	7	17	anti-parallel
Strand 3	B	88	99	anti-parallel
Strand 4	B	105	115	anti-parallel
Strand 5	B	120	127	anti-parallel
Strand 6	B	164	166	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1282	1285	first strand
Strand 2	B	1310	1315	parallel
Strand 3	B	31	35	parallel
Strand 4	B	1328	1334	parallel
Strand 5	B	1343	1349	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	143	first strand
Strand 2	B	146	149	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	611	613	first strand
Strand 2	B	667	669	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1036	1040	first strand
Strand 2	B	1069	1076	anti-parallel
Strand 3	B	1079	1081	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1148	1156	first strand
Strand 2	B	1227	1235	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	27	first strand
Strand 2	D	63	66	anti-parallel
Strand 3	D	57	59	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	108	first strand
Strand 2	D	169	172	anti-parallel
Strand 3	D	150	153	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	224	first strand
Strand 2	D	261	266	anti-parallel
Strand 3	D	254	257	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	224	first strand
Strand 2	D	261	266	anti-parallel
Strand 3	E	348	351	parallel
Strand 4	D	274	276	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	310	first strand
Strand 2	D	365	367	anti-parallel
Strand 3	D	356	358	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	377	first strand
Strand 2	E	370	373	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	423	425	first strand
Strand 2	E	487	491	anti-parallel
Strand 3	E	463	467	anti-parallel
Strand 4	E	454	455	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	473	476	first strand
Strand 2	E	481	484	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	80	first strand
Strand 2	J	96	100	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QE1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QE1