Analysis of interatomic Contacts of Structural Units in PDB entry:
9QE8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QE8 entry

There are 5 chains in PDB entry 9QE8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 320	MET 543
B	VAL 2	VAL 114
C	ALA 319	THR 542
D	VAL 2	VAL 114
E	PRO 320	VAL 370

There are 41 helices in PDB entry 9QE8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	373	381	Right-handed alpha
Helix 2	AA2	A	411	418	Right-handed alpha
Helix 3	AA3	A	441	453	Right-handed alpha
Helix 4	AA4	A	495	498	Right-handed 310
Helix 5	AA5	A	517	521	Right-handed 310
Helix 6	AA6	A	530	541	Right-handed alpha
Helix 7	AA7	B	83	87	Right-handed 310
Helix 8	AA8	C	373	381	Right-handed alpha
Helix 9	AA9	C	411	418	Right-handed alpha
Helix 10	AB1	C	439	453	Right-handed alpha
Helix 11	AB2	C	495	498	Right-handed 310
Helix 12	AB3	C	517	521	Right-handed 310
Helix 13	AB4	C	530	541	Right-handed alpha
Helix 14	AB5	D	83	87	Right-handed 310
Helix 15	AB6	E	373	381	Right-handed alpha
Helix 16	AB7	E	411	418	Right-handed alpha
Helix 17	AB8	E	439	448	Right-handed alpha
Helix 18	AB9	E	496	498	Right-handed 310
Helix 19	AC1	E	517	521	Right-handed 310
Helix 20	AC2	E	530	542	Right-handed alpha
Helix 21	AC3	F	83	87	Right-handed 310
Helix 22	AC4	G	373	381	Right-handed alpha
Helix 23	AC5	G	411	418	Right-handed alpha
Helix 24	AC6	G	441	453	Right-handed alpha
Helix 25	AC7	G	495	498	Right-handed 310
Helix 26	AC8	G	517	521	Right-handed 310
Helix 27	AC9	G	530	542	Right-handed alpha
Helix 28	AD1	H	83	87	Right-handed 310
Helix 29	AD2	I	373	381	Right-handed alpha
Helix 30	AD3	I	411	418	Right-handed alpha
Helix 31	AD4	I	439	454	Right-handed alpha
Helix 32	AD5	I	495	498	Right-handed 310
Helix 33	AD6	I	517	521	Right-handed 310
Helix 34	AD7	I	530	541	Right-handed alpha
Helix 35	AD8	K	373	381	Right-handed alpha
Helix 36	AD9	K	411	418	Right-handed alpha
Helix 37	AE1	K	439	453	Right-handed alpha
Helix 38	AE2	K	495	498	Right-handed 310
Helix 39	AE3	K	517	521	Right-handed 310
Helix 40	AE4	K	530	542	Right-handed alpha
Helix 41	AE5	L	98	102	Right-handed 310

There are 28 sheets in PDB entry 9QE8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	342	first strand
Strand 2	A	322	328	anti-parallel
Strand 3	A	524	529	anti-parallel
Strand 4	A	500	504	anti-parallel
Strand 5	A	407	410	anti-parallel
Strand 6	A	427	429	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	363	first strand
Strand 2	A	347	351	parallel
Strand 3	A	387	392	anti-parallel
Strand 4	A	396	401	anti-parallel
Strand 5	A	434	438	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	18	24	anti-parallel
Strand 3	B	74	79	anti-parallel
Strand 4	B	64	69	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	110	113	parallel
Strand 3	B	88	96	anti-parallel
Strand 4	B	28	36	anti-parallel
Strand 5	B	43	48	anti-parallel
Strand 6	B	55	56	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	110	113	parallel
Strand 3	B	88	96	anti-parallel
Strand 4	B	103	106	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	342	first strand
Strand 2	C	322	328	anti-parallel
Strand 3	C	524	529	anti-parallel
Strand 4	C	500	504	anti-parallel
Strand 5	C	407	410	anti-parallel
Strand 6	C	427	429	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	363	first strand
Strand 2	C	347	351	parallel
Strand 3	C	387	392	anti-parallel
Strand 4	C	396	401	anti-parallel
Strand 5	C	434	438	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	74	79	anti-parallel
Strand 4	D	66	69	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	110	113	parallel
Strand 3	D	88	96	anti-parallel
Strand 4	D	33	36	anti-parallel
Strand 5	D	43	48	anti-parallel
Strand 6	D	54	55	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	D	88	96	anti-parallel
Strand 3	D	104	106	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	342	first strand
Strand 2	E	322	328	anti-parallel
Strand 3	E	524	529	anti-parallel
Strand 4	E	500	504	anti-parallel
Strand 5	E	407	410	anti-parallel
Strand 6	E	427	429	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	361	363	first strand
Strand 2	E	348	351	parallel
Strand 3	E	387	392	anti-parallel
Strand 4	E	396	400	anti-parallel
Strand 5	E	434	438	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	74	79	anti-parallel
Strand 4	F	68	69	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	110	113	parallel
Strand 3	F	88	96	anti-parallel
Strand 4	F	28	36	anti-parallel
Strand 5	F	43	49	anti-parallel
Strand 6	F	53	56	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	110	113	parallel
Strand 3	F	88	96	anti-parallel
Strand 4	F	103	106	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	339	342	first strand
Strand 2	G	322	328	anti-parallel
Strand 3	G	524	529	anti-parallel
Strand 4	G	500	504	anti-parallel
Strand 5	G	407	410	anti-parallel
Strand 6	G	427	429	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	361	363	first strand
Strand 2	G	348	351	parallel
Strand 3	G	387	392	anti-parallel
Strand 4	G	396	401	anti-parallel
Strand 5	G	434	438	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	74	79	anti-parallel
Strand 4	H	66	68	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	55	first strand
Strand 2	H	43	48	anti-parallel
Strand 3	H	28	36	anti-parallel
Strand 4	H	88	98	anti-parallel
Strand 5	H	101	106	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	55	first strand
Strand 2	H	43	48	anti-parallel
Strand 3	H	28	36	anti-parallel
Strand 4	H	88	98	anti-parallel
Strand 5	H	110	112	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	339	342	first strand
Strand 2	I	322	328	anti-parallel
Strand 3	I	524	529	anti-parallel
Strand 4	I	500	504	anti-parallel
Strand 5	I	407	409	anti-parallel
Strand 6	I	427	429	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	361	363	first strand
Strand 2	I	347	351	parallel
Strand 3	I	387	392	anti-parallel
Strand 4	I	396	400	anti-parallel
Strand 5	I	434	438	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	5	first strand
Strand 2	J	18	24	anti-parallel
Strand 3	J	74	79	anti-parallel
Strand 4	J	64	68	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	55	56	first strand
Strand 2	J	43	48	anti-parallel
Strand 3	J	28	36	anti-parallel
Strand 4	J	89	98	anti-parallel
Strand 5	J	101	106	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	339	342	first strand
Strand 2	K	322	328	anti-parallel
Strand 3	K	524	529	anti-parallel
Strand 4	K	500	504	anti-parallel
Strand 5	K	407	410	anti-parallel
Strand 6	K	426	429	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	361	363	first strand
Strand 2	K	347	351	parallel
Strand 3	K	387	392	anti-parallel
Strand 4	K	396	400	anti-parallel
Strand 5	K	434	438	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	18	24	anti-parallel
Strand 3	L	74	79	anti-parallel
Strand 4	L	66	68	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	55	56	first strand
Strand 2	L	43	48	anti-parallel
Strand 3	L	28	35	anti-parallel
Strand 4	L	90	96	anti-parallel
Strand 5	L	103	106	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QE8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QE8