Analysis of interatomic Contacts of Structural Units in PDB entry:
9QED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QED entry

There are 4 chains in PDB entry 9QED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ALA 2ALA 122
A
 PRO 14ALA 906
B
 SER 100VAL 296
D
 LYS 526PRO 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 9QED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
29 33Right-handed 310
Helix 2
AA2
C
34 45Right-handed alpha
Helix 3
AA3
C
45 62Right-handed alpha
Helix 4
AA4
A
16 28Right-handed alpha
Helix 5
AA5
A
40 52Right-handed alpha
Helix 6
AA6
A
65 80Right-handed alpha
Helix 7
AA7
A
93 104Right-handed alpha
Helix 8
AA8
A
110 121Right-handed alpha
Helix 9
AA9
A
135 140Right-handed 310
Helix 10
AB1
A
142 156Right-handed alpha
Helix 11
AB2
A
167 172Right-handed 310
Helix 12
AB3
A
177 185Right-handed alpha
Helix 13
AB4
A
197 205Right-handed alpha
Helix 14
AB5
A
219 244Right-handed alpha
Helix 15
AB6
A
245 248Right-handed 310
Helix 16
AB7
A
249 252Right-handed 310
Helix 17
AB8
A
253 258Right-handed alpha
Helix 18
AB9
A
261 271Right-handed alpha
Helix 19
AC1
A
279 301Right-handed alpha
Helix 20
AC2
A
302 320Right-handed alpha
Helix 21
AC3
A
329 344Right-handed alpha
Helix 22
AC4
A
378 398Right-handed alpha
Helix 23
AC5
A
413 427Right-handed alpha
Helix 24
AC6
A
427 440Right-handed alpha
Helix 25
AC7
A
444 456Right-handed alpha
Helix 26
AC8
A
562 564Right-handed 310
Helix 27
AC9
A
565 573Right-handed alpha
Helix 28
AD1
A
584 598Right-handed alpha
Helix 29
AD2
A
613 641Right-handed alpha
Helix 30
AD3
A
689 692Right-handed 310
Helix 31
AD4
A
694 702Right-handed alpha
Helix 32
AD5
A
729 739Right-handed alpha
Helix 33
AD6
A
739 752Right-handed alpha
Helix 34
AD7
A
783 795Right-handed alpha
Helix 35
AD8
A
805 817Right-handed alpha
Helix 36
AD9
A
828 832Right-handed 310
Helix 37
AE1
A
845 855Right-handed alpha
Helix 38
AE2
A
860 870Right-handed alpha
Helix 39
AE3
A
875 879Right-handed 310
Helix 40
AE4
A
880 889Right-handed alpha
Helix 41
AE5
A
891 902Right-handed alpha
Helix 42
AE6
B
105 108Right-handed 310
Helix 43
AE7
B
110 115Right-handed 310
Helix 44
AE8
B
143 149Right-handed alpha
Helix 45
AE9
B
151 161Right-handed alpha
Helix 46
AF1
B
178 193Right-handed alpha
Helix 47
AF2
B
201 215Right-handed alpha
Helix 48
AF3
B
219 223Right-handed 310
Helix 49
AF4
B
230 241Right-handed alpha
Helix 50
AF5
B
246 258Right-handed alpha
Helix 51
AF6
B
259 266Right-handed alpha
Helix 52
AF7
B
267 274Right-handed alpha
Helix 53
AF8
B
277 290Right-handed alpha
Helix 54
AF9
D
528 533Right-handed alpha
Helix 55
AG1
D
534 536Right-handed 310
Helix 56
AG2
D
541 546Right-handed 310
Helix 57
AG3
D
547 551Right-handed 310
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There are 6 sheets in PDB entry 9QED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 78first strand
Strand 2
C
85 91anti-parallel
Strand 3
C
112 118anti-parallel
Strand 4
C
13 21parallel
Strand 5
C
105 109parallel
Strand 6
C
97 100anti-parallel
Strand 7
A
552 556anti-parallel
Strand 8
A
407 411parallel
Strand 9
A
577 580parallel
Strand 10
A
604 611parallel
Strand 11
A
212 217parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 78first strand
Strand 2
C
85 91anti-parallel
Strand 3
C
112 118anti-parallel
Strand 4
C
13 21parallel
Strand 5
C
7 10anti-parallel
Strand 6
A
544 546anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
105 109parallel
Strand 3
A
58 61parallel
Strand 4
A
128 133parallel
Strand 5
A
160 165parallel
Strand 6
A
32 35parallel
Strand 7
A
190 193parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
705 709first strand
Strand 2
A
683 687parallel
Strand 3
A
716 717anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
723 728first strand
Strand 2
A
755 760parallel
Strand 3
A
799 803parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
101 103parallel
Strand 3
B
130 131anti-parallel
Strand 4
B
136 142anti-parallel
Strand 5
B
166 172parallel
Strand 6
B
195 199parallel
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