Analysis of interatomic Contacts of Structural Units in PDB entry:
9QEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QEE entry

There are 6 chains in PDB entry 9QEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 100VAL 296
C
 ALA 2ALA 122
U
 G 16 A 35
V
 T 2 C 21
D
 SER 467VAL 551
A
 ALA 11GLU 907
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 9QEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
105 108Right-handed 310
Helix 2
AA2
B
112 116Right-handed 310
Helix 3
AA3
B
143 149Right-handed alpha
Helix 4
AA4
B
151 161Right-handed alpha
Helix 5
AA5
B
178 193Right-handed alpha
Helix 6
AA6
B
201 215Right-handed alpha
Helix 7
AA7
B
219 223Right-handed 310
Helix 8
AA8
B
230 239Right-handed alpha
Helix 9
AA9
B
246 258Right-handed alpha
Helix 10
AB1
B
259 266Right-handed alpha
Helix 11
AB2
B
267 274Right-handed alpha
Helix 12
AB3
B
278 290Right-handed alpha
Helix 13
AB4
C
34 37Right-handed 310
Helix 14
AB5
C
38 45Right-handed alpha
Helix 15
AB6
C
45 61Right-handed alpha
Helix 16
AB7
D
469 474Right-handed alpha
Helix 17
AB8
D
475 491Right-handed alpha
Helix 18
AB9
D
506 511Right-handed alpha
Helix 19
AC1
D
528 533Right-handed alpha
Helix 20
AC2
D
541 546Right-handed 310
Helix 21
AC3
D
547 551Right-handed 310
Helix 22
AC4
A
18 29Right-handed alpha
Helix 23
AC5
A
40 52Right-handed alpha
Helix 24
AC6
A
65 80Right-handed alpha
Helix 25
AC7
A
93 104Right-handed alpha
Helix 26
AC8
A
110 120Right-handed alpha
Helix 27
AC9
A
135 139Right-handed 310
Helix 28
AD1
A
143 156Right-handed alpha
Helix 29
AD2
A
167 172Right-handed 310
Helix 30
AD3
A
177 185Right-handed alpha
Helix 31
AD4
A
197 205Right-handed alpha
Helix 32
AD5
A
219 244Right-handed alpha
Helix 33
AD6
A
249 253Right-handed 310
Helix 34
AD7
A
261 271Right-handed alpha
Helix 35
AD8
A
272 276Right-handed 310
Helix 36
AD9
A
279 282Right-handed 310
Helix 37
AE1
A
283 301Right-handed alpha
Helix 38
AE2
A
302 320Right-handed alpha
Helix 39
AE3
A
329 343Right-handed alpha
Helix 40
AE4
A
378 398Right-handed alpha
Helix 41
AE5
A
413 427Right-handed alpha
Helix 42
AE6
A
427 440Right-handed alpha
Helix 43
AE7
A
562 564Right-handed 310
Helix 44
AE8
A
565 573Right-handed alpha
Helix 45
AE9
A
584 597Right-handed alpha
Helix 46
AF1
A
613 642Right-handed alpha
Helix 47
AF2
A
689 691Right-handed 310
Helix 48
AF3
A
694 703Right-handed alpha
Helix 49
AF4
A
729 739Right-handed alpha
Helix 50
AF5
A
739 752Right-handed alpha
Helix 51
AF6
A
783 795Right-handed alpha
Helix 52
AF7
A
805 816Right-handed alpha
Helix 53
AF8
A
845 855Right-handed alpha
Helix 54
AF9
A
862 870Right-handed alpha
Helix 55
AG1
A
872 879Right-handed alpha
Helix 56
AG2
A
880 889Right-handed alpha
Helix 57
AG3
A
890 903Right-handed alpha
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There are 8 sheets in PDB entry 9QEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 123first strand
Strand 2
B
101 103parallel
Strand 3
B
130 131anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 137first strand
Strand 2
B
166 167parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 142first strand
Strand 2
B
170 172parallel
Strand 3
B
197 199parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 79first strand
Strand 2
C
83 87anti-parallel
Strand 3
C
112 120anti-parallel
Strand 4
C
13 21parallel
Strand 5
C
105 109parallel
Strand 6
C
97 100anti-parallel
Strand 7
A
552 556anti-parallel
Strand 8
A
406 411parallel
Strand 9
A
575 580parallel
Strand 10
A
604 610parallel
Strand 11
A
210 216parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 91first strand
Strand 2
C
112 120anti-parallel
Strand 3
C
13 21parallel
Strand 4
C
7 10anti-parallel
Strand 5
A
544 546anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
105 109parallel
Strand 3
A
58 61parallel
Strand 4
A
128 133parallel
Strand 5
A
160 165parallel
Strand 6
A
31 35parallel
Strand 7
A
190 193parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
372 373anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
705 709first strand
Strand 2
A
683 687parallel
Strand 3
A
716 719anti-parallel
Strand 4
A
722 728anti-parallel
Strand 5
A
755 760parallel
Strand 6
A
799 803parallel
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