Analysis of interatomic Contacts of Structural Units in PDB entry:
9QF3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QF3 entry

There is 1 chain in PDB entry 9QF3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 45ALA 614
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9QF3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 61Right-handed 310
Helix 2
AA2
A
78 85Right-handed 310
Helix 3
AA3
A
108 118Right-handed alpha
Helix 4
AA4
A
119 125Right-handed alpha
Helix 5
AA5
A
170 184Right-handed alpha
Helix 6
AA6
A
201 208Right-handed alpha
Helix 7
AA7
A
216 221Right-handed alpha
Helix 8
AA8
A
229 232Right-handed 310
Helix 9
AA9
A
239 245Right-handed alpha
Helix 10
AB1
A
265 269Right-handed 310
Helix 11
AB2
A
270 274Right-handed 310
Helix 12
AB3
A
288 298Right-handed alpha
Helix 13
AB4
A
300 309Right-handed alpha
Helix 14
AB5
A
314 329Right-handed alpha
Helix 15
AB6
A
338 342Right-handed 310
Helix 16
AB7
A
343 365Right-handed alpha
Helix 17
AB8
A
391 395Right-handed 310
Helix 18
AB9
A
407 414Right-handed 310
Helix 19
AC1
A
417 430Right-handed alpha
Helix 20
AC2
A
452 465Right-handed alpha
Helix 21
AC3
A
503 507Right-handed 310
Helix 22
AC4
A
508 525Right-handed alpha
Helix 23
AC5
A
526 531Right-handed alpha
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There are 7 sheets in PDB entry 9QF3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
128 131parallel
Strand 3
A
187 189parallel
Strand 4
A
333 336parallel
Strand 5
A
378 381parallel
Strand 6
A
401 404parallel
Strand 7
A
437 440parallel
Strand 8
A
469 473parallel
Strand 9
A
63 67parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
158 164anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
149 150anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
234 235anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
276 277anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
312 313anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 593first strand
Strand 2
A
582 585anti-parallel
Strand 3
A
609 613anti-parallel
Strand 4
A
555 561anti-parallel
Strand 5
A
542 548anti-parallel
Strand 6
A
532 538anti-parallel
Strand 7
A
571 572anti-parallel
Strand 8
A
598 599anti-parallel
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