Analysis of interatomic Contacts of Structural Units in PDB entry:
9QF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QF8 entry

There is 1 chain in PDB entry 9QF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 43VAL 759
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9QF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
156 161Right-handed 310
Helix 2
AA2
A
175 179Right-handed 310
Helix 3
AA3
A
185 191Right-handed alpha
Helix 4
AA4
A
204 209Right-handed 310
Helix 5
AA5
A
214 218Right-handed 310
Helix 6
AA6
A
227 235Right-handed alpha
Helix 7
AA7
A
285 301Right-handed alpha
Helix 8
AA8
A
319 325Right-handed alpha
Helix 9
AA9
A
352 369Right-handed alpha
Helix 10
AB1
A
379 383Right-handed 310
Helix 11
AB2
A
384 396Right-handed alpha
Helix 12
AB3
A
402 407Right-handed 310
Helix 13
AB4
A
427 433Right-handed 310
Helix 14
AB5
A
441 450Right-handed alpha
Helix 15
AB6
A
463 465Right-handed 310
Helix 16
AB7
A
466 475Right-handed alpha
Helix 17
AB8
A
498 508Right-handed alpha
Helix 18
AB9
A
518 531Right-handed alpha
Helix 19
AC1
A
542 546Right-handed 310
Helix 20
AC2
A
567 573Right-handed alpha
Helix 21
AC3
A
575 589Right-handed alpha
Helix 22
AC4
A
590 595Right-handed 310
Helix 23
AC5
A
683 688Right-handed 310
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There are 9 sheets in PDB entry 9QF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
66 72anti-parallel
Strand 3
A
110 116anti-parallel
Strand 4
A
103 104anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 101first strand
Strand 2
A
76 84anti-parallel
Strand 3
A
123 130anti-parallel
Strand 4
A
133 136anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 101first strand
Strand 2
A
76 84anti-parallel
Strand 3
A
123 130anti-parallel
Strand 4
A
152 153anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 488first strand
Strand 2
A
438 440parallel
Strand 3
A
408 411parallel
Strand 4
A
374 377parallel
Strand 5
A
304 309parallel
Strand 6
A
238 241parallel
Strand 7
A
181 184parallel
Strand 8
A
538 540parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
267 273anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
337 338anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
602 605first strand
Strand 2
A
610 615anti-parallel
Strand 3
A
626 631anti-parallel
Strand 4
A
676 681anti-parallel
Strand 5
A
646 652anti-parallel
Strand 6
A
662 665anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
639 641first strand
Strand 2
A
668 670anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
697 698first strand
Strand 2
A
753 754parallel
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