Analysis of interatomic Contacts of Structural Units in PDB entry:
9QF9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QF9 entry

There is 1 chain in PDB entry 9QF9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 43ALA 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9QF9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 77Right-handed alpha
Helix 2
AA2
A
94 98Right-handed 310
Helix 3
AA3
A
113 127Right-handed alpha
Helix 4
AA4
A
143 147Right-handed 310
Helix 5
AA5
A
153 157Right-handed 310
Helix 6
AA6
A
168 175Right-handed alpha
Helix 7
AA7
A
186 203Right-handed alpha
Helix 8
AA8
A
218 222Right-handed 310
Helix 9
AA9
A
224 231Right-handed alpha
Helix 10
AB1
A
250 260Right-handed alpha
Helix 11
AB2
A
266 279Right-handed alpha
Helix 12
AB3
A
287 292Right-handed alpha
Helix 13
AB4
A
295 298Right-handed 310
Helix 14
AB5
A
305 311Right-handed alpha
Helix 15
AB6
A
312 317Right-handed alpha
Helix 16
AB7
A
318 321Right-handed 310
Helix 17
AB8
A
322 336Right-handed alpha
Helix 18
AB9
A
363 366Right-handed 310
Helix 19
AC1
A
367 381Right-handed alpha
Helix 20
AC2
A
419 422Right-handed 310
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There are 3 sheets in PDB entry 9QF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
235 238parallel
Strand 3
A
207 210parallel
Strand 4
A
130 135parallel
Strand 5
A
81 84parallel
Strand 6
A
55 58parallel
Strand 7
A
340 344parallel
Strand 8
A
300 302parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 390first strand
Strand 2
A
393 398anti-parallel
Strand 3
A
403 407anti-parallel
Strand 4
A
453 456anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 417first strand
Strand 2
A
443 447anti-parallel
Strand 3
A
436 439anti-parallel
Strand 4
A
426 429anti-parallel
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