Analysis of interatomic Contacts of Structural Units in PDB entry:
9QFH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QFH entry

There are 8 chains in PDB entry 9QFH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 2	ARG 828
B	PHE 2	ARG 828
C	PHE 2	ARG 828
D	PHE 2	ARG 828
W	ARG 6	ALA 210
X	ARG 6	ALA 210
Y	ARG 6	ALA 210
Z	ARG 6	ALA 210

There are142 helices in PDB entry 9QFH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	32	Right-handed alpha
Helix 2	AA2	A	54	69	Right-handed alpha
Helix 3	AA3	A	81	92	Right-handed alpha
Helix 4	AA4	A	117	129	Right-handed alpha
Helix 5	AA5	A	143	157	Right-handed alpha
Helix 6	AA6	A	170	184	Right-handed alpha
Helix 7	AA7	A	194	209	Right-handed alpha
Helix 8	AA8	A	223	227	Right-handed 310
Helix 9	AA9	A	229	236	Right-handed alpha
Helix 10	AB1	A	249	260	Right-handed alpha
Helix 11	AB2	A	276	299	Right-handed alpha
Helix 12	AB3	A	321	331	Right-handed alpha
Helix 13	AB4	A	413	417	Right-handed 310
Helix 14	AB5	A	418	421	Right-handed 310
Helix 15	AB6	A	425	438	Right-handed alpha
Helix 16	AB7	A	463	471	Right-handed alpha
Helix 17	AB8	A	484	489	Right-handed alpha
Helix 18	AB9	A	517	521	Right-handed 310
Helix 19	AC1	A	524	548	Right-handed alpha
Helix 20	AC2	A	549	554	Right-handed alpha
Helix 21	AC3	A	576	589	Right-handed alpha
Helix 22	AC4	A	599	634	Right-handed alpha
Helix 23	AC5	A	639	646	Right-handed alpha
Helix 24	AC6	A	657	666	Right-handed alpha
Helix 25	AC7	A	668	681	Right-handed alpha
Helix 26	AC8	A	689	700	Right-handed alpha
Helix 27	AC9	A	710	718	Right-handed alpha
Helix 28	AD1	A	746	760	Right-handed alpha
Helix 29	AD2	A	761	772	Right-handed alpha
Helix 30	AD3	A	792	795	Right-handed 310
Helix 31	AD4	A	796	828	Right-handed alpha
Helix 32	AD5	B	16	32	Right-handed alpha
Helix 33	AD6	B	54	69	Right-handed alpha
Helix 34	AD7	B	81	93	Right-handed alpha
Helix 35	AD8	B	117	128	Right-handed alpha
Helix 36	AD9	B	143	157	Right-handed alpha
Helix 37	AE1	B	170	184	Right-handed alpha
Helix 38	AE2	B	194	208	Right-handed alpha
Helix 39	AE3	B	224	227	Right-handed 310
Helix 40	AE4	B	229	236	Right-handed alpha
Helix 41	AE5	B	249	260	Right-handed alpha
Helix 42	AE6	B	276	299	Right-handed alpha
Helix 43	AE7	B	322	331	Right-handed alpha
Helix 44	AE8	B	413	417	Right-handed 310
Helix 45	AE9	B	418	421	Right-handed 310
Helix 46	AF1	B	425	438	Right-handed alpha
Helix 47	AF2	B	463	471	Right-handed alpha
Helix 48	AF3	B	484	489	Right-handed alpha
Helix 49	AF4	B	517	521	Right-handed 310
Helix 50	AF5	B	524	548	Right-handed alpha
Helix 51	AF6	B	549	554	Right-handed alpha
Helix 52	AF7	B	576	589	Right-handed alpha
Helix 53	AF8	B	599	630	Right-handed alpha
Helix 54	AF9	B	639	646	Right-handed alpha
Helix 55	AG1	B	657	666	Right-handed alpha
Helix 56	AG2	B	668	680	Right-handed alpha
Helix 57	AG3	B	689	700	Right-handed alpha
Helix 58	AG4	B	710	718	Right-handed alpha
Helix 59	AG5	B	746	760	Right-handed alpha
Helix 60	AG6	B	761	772	Right-handed alpha
Helix 61	AG7	B	792	795	Right-handed 310
Helix 62	AG8	B	796	828	Right-handed alpha
Helix 63	AG9	C	17	32	Right-handed alpha
Helix 64	AH1	C	54	69	Right-handed alpha
Helix 65	AH2	C	81	92	Right-handed alpha
Helix 66	AH3	C	117	129	Right-handed alpha
Helix 67	AH4	C	143	157	Right-handed alpha
Helix 68	AH5	C	170	184	Right-handed alpha
Helix 69	AH6	C	194	209	Right-handed alpha
Helix 70	AH7	C	223	227	Right-handed 310
Helix 71	AH8	C	229	236	Right-handed alpha
Helix 72	AH9	C	249	260	Right-handed alpha
Helix 73	AI1	C	276	299	Right-handed alpha
Helix 74	AI2	C	321	331	Right-handed alpha
Helix 75	AI3	C	418	421	Right-handed 310
Helix 76	AI4	C	425	438	Right-handed alpha
Helix 77	AI5	C	463	471	Right-handed alpha
Helix 78	AI6	C	484	489	Right-handed alpha
Helix 79	AI7	C	517	521	Right-handed 310
Helix 80	AI8	C	524	548	Right-handed alpha
Helix 81	AI9	C	549	554	Right-handed alpha
Helix 82	AJ1	C	576	590	Right-handed alpha
Helix 83	AJ2	C	599	634	Right-handed alpha
Helix 84	AJ3	C	639	646	Right-handed alpha
Helix 85	AJ4	C	657	666	Right-handed alpha
Helix 86	AJ5	C	668	681	Right-handed alpha
Helix 87	AJ6	C	689	700	Right-handed alpha
Helix 88	AJ7	C	710	717	Right-handed alpha
Helix 89	AJ8	C	746	760	Right-handed alpha
Helix 90	AJ9	C	761	772	Right-handed alpha
Helix 91	AK1	C	792	795	Right-handed 310
Helix 92	AK2	C	796	828	Right-handed alpha
Helix 93	AK3	D	16	32	Right-handed alpha
Helix 94	AK4	D	54	69	Right-handed alpha
Helix 95	AK5	D	81	93	Right-handed alpha
Helix 96	AK6	D	117	128	Right-handed alpha
Helix 97	AK7	D	143	157	Right-handed alpha
Helix 98	AK8	D	170	184	Right-handed alpha
Helix 99	AK9	D	194	208	Right-handed alpha
Helix 100	AL1	D	224	227	Right-handed 310
Helix 101	AL2	D	229	236	Right-handed alpha
Helix 102	AL3	D	249	260	Right-handed alpha
Helix 103	AL4	D	276	299	Right-handed alpha
Helix 104	AL5	D	322	331	Right-handed alpha
Helix 105	AL6	D	418	421	Right-handed 310
Helix 106	AL7	D	425	439	Right-handed alpha
Helix 107	AL8	D	463	471	Right-handed alpha
Helix 108	AL9	D	484	489	Right-handed alpha
Helix 109	AM1	D	517	521	Right-handed 310
Helix 110	AM2	D	524	548	Right-handed alpha
Helix 111	AM3	D	549	554	Right-handed alpha
Helix 112	AM4	D	576	589	Right-handed alpha
Helix 113	AM5	D	599	630	Right-handed alpha
Helix 114	AM6	D	640	646	Right-handed alpha
Helix 115	AM7	D	657	666	Right-handed alpha
Helix 116	AM8	D	668	681	Right-handed alpha
Helix 117	AM9	D	689	700	Right-handed alpha
Helix 118	AN1	D	710	718	Right-handed alpha
Helix 119	AN2	D	746	760	Right-handed alpha
Helix 120	AN3	D	761	772	Right-handed alpha
Helix 121	AN4	D	792	795	Right-handed 310
Helix 122	AN5	D	796	828	Right-handed alpha
Helix 123	AN6	W	7	30	Right-handed alpha
Helix 124	AN7	W	95	105	Right-handed alpha
Helix 125	AN8	W	105	126	Right-handed alpha
Helix 126	AN9	W	132	161	Right-handed alpha
Helix 127	AO1	W	177	210	Right-handed alpha
Helix 128	AO2	X	7	30	Right-handed alpha
Helix 129	AO3	X	95	105	Right-handed alpha
Helix 130	AO4	X	105	128	Right-handed alpha
Helix 131	AO5	X	132	161	Right-handed alpha
Helix 132	AO6	X	177	210	Right-handed alpha
Helix 133	AO7	Y	7	26	Right-handed alpha
Helix 134	AO8	Y	96	105	Right-handed alpha
Helix 135	AO9	Y	105	128	Right-handed alpha
Helix 136	AP1	Y	132	161	Right-handed alpha
Helix 137	AP2	Y	177	210	Right-handed alpha
Helix 138	AP3	Z	7	30	Right-handed alpha
Helix 139	AP4	Z	94	105	Right-handed alpha
Helix 140	AP5	Z	105	128	Right-handed alpha
Helix 141	AP6	Z	132	161	Right-handed alpha
Helix 142	AP7	Z	177	210	Right-handed alpha

There are 36 sheets in PDB entry 9QFH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	49	first strand
Strand 2	A	5	12	parallel
Strand 3	A	72	75	parallel
Strand 4	A	95	98	parallel
Strand 5	A	110	112	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	164	first strand
Strand 2	A	132	137	parallel
Strand 3	A	188	192	parallel
Strand 4	A	216	219	parallel
Strand 5	A	238	243	parallel
Strand 6	A	355	360	anti-parallel
Strand 7	A	365	371	anti-parallel
Strand 8	A	378	379	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	340	342	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	446	first strand
Strand 2	A	398	401	parallel
Strand 3	A	476	477	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	410	first strand
Strand 2	A	423	424	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	493	first strand
Strand 2	A	739	741	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	500	first strand
Strand 2	A	734	736	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	650	652	first strand
Strand 2	A	704	709	parallel
Strand 3	A	502	507	anti-parallel
Strand 4	A	724	727	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	49	first strand
Strand 2	B	5	12	parallel
Strand 3	B	72	75	parallel
Strand 4	B	95	98	parallel
Strand 5	B	110	112	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	134	137	parallel
Strand 3	B	188	192	parallel
Strand 4	B	216	222	parallel
Strand 5	B	238	243	parallel
Strand 6	B	355	360	anti-parallel
Strand 7	B	365	371	anti-parallel
Strand 8	B	378	379	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	337	first strand
Strand 2	B	340	344	anti-parallel
Strand 3	B	350	351	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	446	first strand
Strand 2	B	398	401	parallel
Strand 3	B	476	477	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	423	424	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	493	first strand
Strand 2	B	739	741	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	500	first strand
Strand 2	B	734	736	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	652	first strand
Strand 2	B	704	709	parallel
Strand 3	B	502	507	anti-parallel
Strand 4	B	724	727	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	49	first strand
Strand 2	C	5	12	parallel
Strand 3	C	72	75	parallel
Strand 4	C	95	98	parallel
Strand 5	C	110	112	parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	164	first strand
Strand 2	C	132	137	parallel
Strand 3	C	188	192	parallel
Strand 4	C	216	219	parallel
Strand 5	C	238	243	parallel
Strand 6	C	355	360	anti-parallel
Strand 7	C	365	372	anti-parallel
Strand 8	C	376	379	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	337	first strand
Strand 2	C	340	342	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	401	first strand
Strand 2	C	443	446	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	410	first strand
Strand 2	C	423	424	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	482	first strand
Strand 2	C	734	741	anti-parallel
Strand 3	C	491	493	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	482	first strand
Strand 2	C	734	741	anti-parallel
Strand 3	C	498	500	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	652	first strand
Strand 2	C	704	709	parallel
Strand 3	C	502	507	anti-parallel
Strand 4	C	724	727	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	49	first strand
Strand 2	D	5	12	parallel
Strand 3	D	72	75	parallel
Strand 4	D	95	98	parallel
Strand 5	D	111	112	parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	164	first strand
Strand 2	D	134	137	parallel
Strand 3	D	188	192	parallel
Strand 4	D	216	222	parallel
Strand 5	D	238	243	parallel
Strand 6	D	355	360	anti-parallel
Strand 7	D	365	371	anti-parallel
Strand 8	D	378	379	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	337	first strand
Strand 2	D	340	344	anti-parallel
Strand 3	D	350	351	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	443	446	first strand
Strand 2	D	398	401	parallel
Strand 3	D	476	477	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	410	first strand
Strand 2	D	423	424	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	491	493	first strand
Strand 2	D	739	741	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	498	500	first strand
Strand 2	D	734	736	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	650	652	first strand
Strand 2	D	704	709	parallel
Strand 3	D	502	507	anti-parallel
Strand 4	D	724	727	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	77	79	first strand
Strand 2	W	65	68	anti-parallel
Strand 3	W	57	61	anti-parallel
Strand 4	W	34	38	anti-parallel
Strand 5	W	175	176	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	77	79	first strand
Strand 2	X	65	70	anti-parallel
Strand 3	X	57	61	anti-parallel
Strand 4	X	34	38	anti-parallel
Strand 5	X	175	176	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	77	79	first strand
Strand 2	Y	65	68	anti-parallel
Strand 3	Y	57	61	anti-parallel
Strand 4	Y	34	38	anti-parallel
Strand 5	Y	175	176	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	77	79	first strand
Strand 2	Z	65	70	anti-parallel
Strand 3	Z	57	61	anti-parallel
Strand 4	Z	34	38	anti-parallel
Strand 5	Z	175	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QFH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QFH