Analysis of interatomic Contacts of Structural Units in PDB entry:
9QFM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QFM entry

There are 36 chains in PDB entry 9QFM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 223	TYR 234
B	LEU 223	ALA 232
C	LEU 223	ALA 232
D	LEU 223	TYR 234
E	LEU 223	TYR 234
F	LEU 223	TYR 234
G	LEU 223	ALA 232
H	LEU 223	TYR 234
I	LEU 223	TYR 234
J	LEU 223	ALA 232
a	LEU 223	TYR 234
b	LEU 223	ALA 232
c	LEU 223	TYR 234
d	LEU 223	TYR 234
e	LEU 223	TYR 234
f	LEU 223	ALA 232
g	LEU 223	TYR 234
h	LEU 223	TYR 234
i	LEU 223	ALA 232
j	LEU 223	TYR 234
k	LEU 223	TYR 234
l	LEU 223	ALA 232
m	LEU 223	TYR 234
n	LEU 223	TYR 234
o	LEU 223	ALA 232
p	LEU 223	TYR 234
q	LEU 223	TYR 234
r	LEU 223	ALA 232
s	LEU 223	TYR 234
t	LEU 223	TYR 234
u	LEU 223	ALA 232
v	LEU 223	TYR 234
w	LEU 223	TYR 234
x	LEU 223	ALA 232
y	LEU 223	TYR 234
z	LEU 223	TYR 234

There are no helices in PDB entry 9QFM

There are 10 sheets in PDB entry 9QFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	224	225	first strand
Strand 2	A	224	225	parallel
Strand 3	t	224	225	parallel
Strand 4	n	224	225	parallel
Strand 5	h	224	225	parallel
Strand 6	a	224	225	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	228	233	first strand
Strand 2	A	228	233	parallel
Strand 3	t	228	233	parallel
Strand 4	n	228	233	parallel
Strand 5	h	228	233	parallel
Strand 6	a	228	233	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	224	230	first strand
Strand 2	B	224	230	parallel
Strand 3	u	224	230	parallel
Strand 4	o	224	230	parallel
Strand 5	i	224	230	parallel
Strand 6	b	224	230	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	224	230	first strand
Strand 2	C	224	230	parallel
Strand 3	x	224	230	parallel
Strand 4	r	224	230	parallel
Strand 5	l	224	230	parallel
Strand 6	f	224	230	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	224	229	first strand
Strand 2	D	224	229	parallel
Strand 3	v	224	229	parallel
Strand 4	p	224	229	parallel
Strand 5	j	224	229	parallel
Strand 6	d	224	229	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	232	233	first strand
Strand 2	D	232	233	parallel
Strand 3	v	232	233	parallel
Strand 4	p	232	233	parallel
Strand 5	j	232	233	parallel
Strand 6	d	232	233	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	224	225	first strand
Strand 2	E	224	225	parallel
Strand 3	w	224	225	parallel
Strand 4	q	224	225	parallel
Strand 5	k	224	225	parallel
Strand 6	e	224	225	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	228	233	first strand
Strand 2	E	228	233	parallel
Strand 3	w	228	233	parallel
Strand 4	q	228	233	parallel
Strand 5	k	228	233	parallel
Strand 6	e	228	233	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	224	229	first strand
Strand 2	z	224	229	parallel
Strand 3	y	224	229	parallel
Strand 4	s	224	229	parallel
Strand 5	m	224	229	parallel
Strand 6	g	224	229	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	232	233	first strand
Strand 2	z	232	233	parallel
Strand 3	y	232	233	parallel
Strand 4	s	232	233	parallel
Strand 5	m	232	233	parallel
Strand 6	g	232	233	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QFM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QFM