Analysis of interatomic Contacts of Structural Units in PDB entry:
9QFP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QFP entry

There are 11 chains in PDB entry 9QFP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 9	GLY 755
B	ALA 2	GLY 741
C	ALA 2	TYR 81
D	THR 2	PRO 139
E	MET 1	ALA 70
F	ASP 24	ARG 164
I	MET 2	ALA 38
J	MET 1	LEU 41
K	THR 5	LEU 83
M	MET 1	LYS 31
X	LYS 10	LYS 39

There are110 helices in PDB entry 9QFP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	30	Right-handed 310
Helix 2	AA2	A	35	39	Right-handed 310
Helix 3	AA3	A	45	54	Right-handed alpha
Helix 4	AA4	A	57	61	Right-handed 310
Helix 5	AA5	A	64	97	Right-handed alpha
Helix 6	AA6	A	99	106	Right-handed alpha
Helix 7	AA7	A	122	127	Right-handed 310
Helix 8	AA8	A	142	150	Right-handed alpha
Helix 9	AA9	A	154	182	Right-handed alpha
Helix 10	AB1	A	186	191	Right-handed alpha
Helix 11	AB2	A	192	203	Right-handed alpha
Helix 12	AB3	A	203	219	Right-handed alpha
Helix 13	AB4	A	219	229	Right-handed alpha
Helix 14	AB5	A	232	236	Right-handed 310
Helix 15	AB6	A	238	245	Right-handed alpha
Helix 16	AB7	A	245	253	Right-handed alpha
Helix 17	AB8	A	261	263	Right-handed 310
Helix 18	AB9	A	264	269	Right-handed alpha
Helix 19	AC1	A	270	276	Right-handed 310
Helix 20	AC2	A	293	312	Right-handed alpha
Helix 21	AC3	A	324	332	Right-handed alpha
Helix 22	AC4	A	343	351	Right-handed alpha
Helix 23	AC5	A	351	377	Right-handed alpha
Helix 24	AC6	A	386	419	Right-handed alpha
Helix 25	AC7	A	421	425	Right-handed 310
Helix 26	AC8	A	428	435	Right-handed alpha
Helix 27	AC9	A	436	468	Right-handed alpha
Helix 28	AD1	A	470	474	Right-handed 310
Helix 29	AD2	A	484	496	Right-handed alpha
Helix 30	AD3	A	510	514	Right-handed 310
Helix 31	AD4	A	532	559	Right-handed alpha
Helix 32	AD5	A	568	573	Right-handed alpha
Helix 33	AD6	A	590	621	Right-handed alpha
Helix 34	AD7	A	638	643	Right-handed alpha
Helix 35	AD8	A	645	653	Right-handed alpha
Helix 36	AD9	A	653	658	Right-handed alpha
Helix 37	AE1	A	658	663	Right-handed alpha
Helix 38	AE2	A	669	691	Right-handed alpha
Helix 39	AE3	A	693	711	Right-handed alpha
Helix 40	AE4	A	723	755	Right-handed alpha
Helix 41	AE5	B	9	14	Right-handed alpha
Helix 42	AE6	B	18	28	Right-handed alpha
Helix 43	AE7	B	30	34	Right-handed 310
Helix 44	AE8	B	38	72	Right-handed alpha
Helix 45	AE9	B	73	80	Right-handed alpha
Helix 46	AF1	B	97	105	Right-handed alpha
Helix 47	AF2	B	119	127	Right-handed alpha
Helix 48	AF3	B	131	156	Right-handed alpha
Helix 49	AF4	B	157	162	Right-handed 310
Helix 50	AF5	B	164	169	Right-handed alpha
Helix 51	AF6	B	170	181	Right-handed alpha
Helix 52	AF7	B	183	197	Right-handed alpha
Helix 53	AF8	B	197	203	Right-handed alpha
Helix 54	AF9	B	211	215	Right-handed 310
Helix 55	AG1	B	222	228	Right-handed alpha
Helix 56	AG2	B	229	235	Right-handed 310
Helix 57	AG3	B	269	288	Right-handed alpha
Helix 58	AG4	B	300	306	Right-handed alpha
Helix 59	AG5	B	317	321	Right-handed 310
Helix 60	AG6	B	325	333	Right-handed alpha
Helix 61	AG7	B	333	359	Right-handed alpha
Helix 62	AG8	B	364	367	Right-handed 310
Helix 63	AG9	B	368	401	Right-handed alpha
Helix 64	AH1	B	404	408	Right-handed 310
Helix 65	AH2	B	410	418	Right-handed alpha
Helix 66	AH3	B	418	450	Right-handed alpha
Helix 67	AH4	B	452	456	Right-handed 310
Helix 68	AH5	B	461	471	Right-handed alpha
Helix 69	AH6	B	473	477	Right-handed 310
Helix 70	AH7	B	480	484	Right-handed 310
Helix 71	AH8	B	487	492	Right-handed alpha
Helix 72	AH9	B	500	510	Right-handed alpha
Helix 73	AI1	B	520	547	Right-handed alpha
Helix 74	AI2	B	556	561	Right-handed 310
Helix 75	AI3	B	578	610	Right-handed alpha
Helix 76	AI4	B	613	620	Right-handed alpha
Helix 77	AI5	B	622	630	Right-handed alpha
Helix 78	AI6	B	630	635	Right-handed alpha
Helix 79	AI7	B	635	640	Right-handed alpha
Helix 80	AI8	B	650	673	Right-handed alpha
Helix 81	AI9	B	674	692	Right-handed alpha
Helix 82	AJ1	B	694	698	Right-handed 310
Helix 83	AJ2	B	708	740	Right-handed alpha
Helix 84	AJ3	C	15	21	Right-handed alpha
Helix 85	AJ4	C	44	48	Right-handed 310
Helix 86	AJ5	C	52	58	Right-handed alpha
Helix 87	AJ6	D	20	25	Right-handed alpha
Helix 88	AJ7	D	61	72	Right-handed alpha
Helix 89	AJ8	D	73	77	Right-handed 310
Helix 90	AJ9	D	119	123	Right-handed 310
Helix 91	AK1	D	125	130	Right-handed 310
Helix 92	AK2	E	62	64	Right-handed 310
Helix 93	AK3	F	24	28	Right-handed 310
Helix 94	AK4	F	34	43	Right-handed alpha
Helix 95	AK5	F	52	62	Right-handed alpha
Helix 96	AK6	F	79	83	Right-handed 310
Helix 97	AK7	F	86	112	Right-handed alpha
Helix 98	AK8	F	116	123	Right-handed alpha
Helix 99	AK9	F	125	135	Right-handed alpha
Helix 100	AL1	F	138	149	Right-handed alpha
Helix 101	AL2	F	155	159	Right-handed 310
Helix 102	AL3	I	9	20	Right-handed alpha
Helix 103	AL4	I	20	35	Right-handed alpha
Helix 104	AL5	J	2	9	Right-handed alpha
Helix 105	AL6	J	10	33	Right-handed alpha
Helix 106	AL7	K	12	34	Right-handed alpha
Helix 107	AL8	K	48	52	Right-handed 310
Helix 108	AL9	K	55	80	Right-handed alpha
Helix 109	AM1	M	4	31	Right-handed alpha
Helix 110	AM2	X	13	35	Right-handed alpha

There are 13 sheets in PDB entry 9QFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	183	185	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	115	first strand
Strand 2	A	135	138	anti-parallel
Strand 3	A	128	129	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	520	first strand
Strand 2	A	523	526	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	625	first strand
Strand 2	A	631	633	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	310	first strand
Strand 2	B	313	314	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	643	first strand
Strand 2	B	646	647	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	115	116	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	59	first strand
Strand 2	D	27	34	anti-parallel
Strand 3	D	82	86	anti-parallel
Strand 4	D	92	96	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	41	first strand
Strand 2	D	47	50	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	61	first strand
Strand 2	E	37	40	anti-parallel
Strand 3	E	21	27	anti-parallel
Strand 4	E	7	10	anti-parallel
Strand 5	E	66	68	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	30	first strand
Strand 2	F	65	66	anti-parallel
Strand 3	F	72	73	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QFP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QFP