Analysis of interatomic Contacts of Structural Units in PDB entry:
9QFX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QFX entry

There are 4 chains in PDB entry 9QFX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 31VAL 295
B
 ARG 31VAL 295
C
 VAL 2GLY 263
D
 VAL 2GLY 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 9QFX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 46Right-handed alpha
Helix 2
AA2
A
47 65Right-handed alpha
Helix 3
AA3
A
68 91Right-handed alpha
Helix 4
AA4
A
94 118Right-handed alpha
Helix 5
AA5
A
121 126Right-handed alpha
Helix 6
AA6
A
126 131Right-handed alpha
Helix 7
AA7
A
137 164Right-handed alpha
Helix 8
AA8
A
171 175Right-handed 310
Helix 9
AA9
A
176 202Right-handed alpha
Helix 10
AB1
A
204 220Right-handed alpha
Helix 11
AB2
A
225 230Right-handed 310
Helix 12
AB3
A
235 241Right-handed alpha
Helix 13
AB4
A
243 258Right-handed alpha
Helix 14
AB5
A
262 288Right-handed alpha
Helix 15
AB6
A
290 295Right-handed alpha
Helix 16
AB7
B
32 46Right-handed alpha
Helix 17
AB8
B
47 65Right-handed alpha
Helix 18
AB9
B
68 91Right-handed alpha
Helix 19
AC1
B
94 118Right-handed alpha
Helix 20
AC2
B
121 126Right-handed alpha
Helix 21
AC3
B
126 131Right-handed alpha
Helix 22
AC4
B
137 164Right-handed alpha
Helix 23
AC5
B
171 175Right-handed 310
Helix 24
AC6
B
176 202Right-handed alpha
Helix 25
AC7
B
204 220Right-handed alpha
Helix 26
AC8
B
225 230Right-handed 310
Helix 27
AC9
B
235 241Right-handed alpha
Helix 28
AD1
B
243 258Right-handed alpha
Helix 29
AD2
B
262 288Right-handed alpha
Helix 30
AD3
B
290 295Right-handed alpha
Helix 31
AD4
C
22 31Right-handed alpha
Helix 32
AD5
C
70 79Right-handed alpha
Helix 33
AD6
C
110 112Right-handed 310
Helix 34
AD7
C
113 122Right-handed alpha
Helix 35
AD8
C
125 141Right-handed alpha
Helix 36
AD9
C
142 146Right-handed 310
Helix 37
AE1
C
149 153Right-handed 310
Helix 38
AE2
C
154 167Right-handed alpha
Helix 39
AE3
C
177 183Right-handed 310
Helix 40
AE4
C
184 191Right-handed alpha
Helix 41
AE5
C
191 202Right-handed alpha
Helix 42
AE6
C
211 219Right-handed alpha
Helix 43
AE7
C
236 263Right-handed alpha
Helix 44
AE8
D
22 31Right-handed alpha
Helix 45
AE9
D
70 79Right-handed alpha
Helix 46
AF1
D
110 112Right-handed 310
Helix 47
AF2
D
113 122Right-handed alpha
Helix 48
AF3
D
125 141Right-handed alpha
Helix 49
AF4
D
142 146Right-handed 310
Helix 50
AF5
D
149 153Right-handed 310
Helix 51
AF6
D
154 167Right-handed alpha
Helix 52
AF7
D
177 183Right-handed 310
Helix 53
AF8
D
184 191Right-handed alpha
Helix 54
AF9
D
191 202Right-handed alpha
Helix 55
AG1
D
211 219Right-handed alpha
Helix 56
AG2
D
236 263Right-handed alpha
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There are 4 sheets in PDB entry 9QFX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 55first strand
Strand 2
C
4 14anti-parallel
Strand 3
C
86 91anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 97first strand
Strand 2
C
173 176parallel
Strand 3
C
204 208parallel
Strand 4
C
60 65parallel
Strand 5
C
221 226parallel
Strand 6
C
229 235anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 55first strand
Strand 2
D
4 14anti-parallel
Strand 3
D
86 91anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
95 97first strand
Strand 2
D
173 176parallel
Strand 3
D
204 208parallel
Strand 4
D
60 65parallel
Strand 5
D
221 226parallel
Strand 6
D
229 235anti-parallel
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