Analysis of interatomic Contacts of Structural Units in PDB entry:
9QGC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QGC entry

There is 1 chain in PDB entry 9QGC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ASN 14	LEU 370

There are 19 helices in PDB entry 9QGC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	43	47	Right-handed 310
Helix 2	AA2	D	49	58	Right-handed alpha
Helix 3	AA3	D	73	77	Right-handed 310
Helix 4	AA4	D	87	104	Right-handed alpha
Helix 5	AA5	D	120	128	Right-handed 310
Helix 6	AA6	D	158	160	Right-handed 310
Helix 7	AA7	D	161	179	Right-handed alpha
Helix 8	AA8	D	192	199	Right-handed alpha
Helix 9	AA9	D	212	217	Right-handed alpha
Helix 10	AB1	D	217	228	Right-handed alpha
Helix 11	AB2	D	232	234	Right-handed 310
Helix 12	AB3	D	245	249	Right-handed 310
Helix 13	AB4	D	253	265	Right-handed alpha
Helix 14	AB5	D	266	269	Right-handed 310
Helix 15	AB6	D	291	299	Right-handed alpha
Helix 16	AB7	D	310	320	Right-handed alpha
Helix 17	AB8	D	329	335	Right-handed alpha
Helix 18	AB9	D	337	344	Right-handed alpha
Helix 19	AC1	D	352	356	Right-handed 310

There are 4 sheets in PDB entry 9QGC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	23	first strand
Strand 2	D	26	28	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	34	first strand
Strand 2	D	64	71	parallel
Strand 3	D	108	113	parallel
Strand 4	D	183	187	parallel
Strand 5	D	236	240	parallel
Strand 6	D	272	276	parallel
Strand 7	D	303	306	parallel
Strand 8	D	325	328	parallel
Strand 9	D	32	34	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	132	first strand
Strand 2	D	155	156	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	144	first strand
Strand 2	D	147	150	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QGC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QGC