Analysis of interatomic Contacts of Structural Units in PDB entry:
9QGI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QGI entry

There are 4 chains in PDB entry 9QGI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4581	ARG 4874
B	ASP 194	PRO 1191
C	MET 1	ALA 76
E	MET 1	ALA 76

There are 58 helices in PDB entry 9QGI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4582	4593	Right-handed alpha
Helix 2	AA2	A	4618	4626	Right-handed alpha
Helix 3	AA3	A	4630	4648	Right-handed alpha
Helix 4	AA4	A	4726	4730	Right-handed 310
Helix 5	AA5	A	4746	4758	Right-handed alpha
Helix 6	AA6	A	4762	4767	Right-handed 310
Helix 7	AA7	A	4769	4774	Right-handed 310
Helix 8	AA8	A	4776	4798	Right-handed alpha
Helix 9	AA9	A	4799	4805	Right-handed alpha
Helix 10	AB1	A	4810	4821	Right-handed alpha
Helix 11	AB2	A	4821	4837	Right-handed alpha
Helix 12	AB3	A	4842	4868	Right-handed alpha
Helix 13	AB4	B	196	208	Right-handed alpha
Helix 14	AB5	B	208	216	Right-handed alpha
Helix 15	AB6	B	226	240	Right-handed alpha
Helix 16	AB7	B	253	259	Right-handed 310
Helix 17	AB8	B	264	268	Right-handed 310
Helix 18	AB9	B	271	282	Right-handed alpha
Helix 19	AC1	B	297	302	Right-handed alpha
Helix 20	AC2	B	313	327	Right-handed alpha
Helix 21	AC3	B	401	405	Right-handed 310
Helix 22	AC4	B	450	455	Right-handed alpha
Helix 23	AC5	B	469	488	Right-handed alpha
Helix 24	AC6	B	497	512	Right-handed alpha
Helix 25	AC7	B	517	528	Right-handed alpha
Helix 26	AC8	B	532	553	Right-handed alpha
Helix 27	AC9	B	567	570	Right-handed 310
Helix 28	AD1	B	576	581	Right-handed 310
Helix 29	AD2	B	587	595	Right-handed alpha
Helix 30	AD3	B	595	604	Right-handed alpha
Helix 31	AD4	B	613	627	Right-handed alpha
Helix 32	AD5	B	644	650	Right-handed 310
Helix 33	AD6	B	655	659	Right-handed 310
Helix 34	AD7	B	662	675	Right-handed alpha
Helix 35	AD8	B	688	692	Right-handed 310
Helix 36	AD9	B	696	702	Right-handed alpha
Helix 37	AE1	B	712	727	Right-handed alpha
Helix 38	AE2	B	765	771	Right-handed alpha
Helix 39	AE3	B	775	792	Right-handed alpha
Helix 40	AE4	B	795	804	Right-handed alpha
Helix 41	AE5	B	806	812	Right-handed alpha
Helix 42	AE6	B	817	831	Right-handed alpha
Helix 43	AE7	B	837	854	Right-handed alpha
Helix 44	AE8	B	854	864	Right-handed alpha
Helix 45	AE9	B	893	912	Right-handed alpha
Helix 46	AF1	B	918	927	Right-handed alpha
Helix 47	AF2	B	962	976	Right-handed alpha
Helix 48	AF3	B	996	1012	Right-handed alpha
Helix 49	AF4	B	1018	1027	Right-handed alpha
Helix 50	AF5	B	1033	1054	Right-handed alpha
Helix 51	AF6	B	1104	1116	Right-handed alpha
Helix 52	AF7	B	1136	1144	Right-handed alpha
Helix 53	AF8	B	1147	1157	Right-handed alpha
Helix 54	AF9	C	22	35	Right-handed alpha
Helix 55	AG1	C	37	41	Right-handed 310
Helix 56	AG2	C	55	60	Right-handed 310
Helix 57	AG3	E	22	34	Right-handed alpha
Helix 58	AG4	E	37	41	Right-handed 310

There are 12 sheets in PDB entry 9QGI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4596	4599	first strand
Strand 2	A	4656	4661	parallel
Strand 3	A	4667	4673	anti-parallel
Strand 4	A	4684	4690	anti-parallel
Strand 5	A	4701	4704	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4602	4604	first strand
Strand 2	A	4610	4612	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	292	first strand
Strand 2	B	243	247	parallel
Strand 3	B	219	223	parallel
Strand 4	B	306	310	parallel
Strand 5	B	330	337	parallel
Strand 6	B	340	346	anti-parallel
Strand 7	B	561	565	anti-parallel
Strand 8	B	460	461	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	353	first strand
Strand 2	B	444	446	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	411	first strand
Strand 2	B	392	398	anti-parallel
Strand 3	B	434	440	anti-parallel
Strand 4	B	363	369	anti-parallel
Strand 5	B	375	379	anti-parallel
Strand 6	B	419	423	anti-parallel
Strand 7	B	413	414	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	680	683	first strand
Strand 2	B	634	638	parallel
Strand 3	B	606	610	parallel
Strand 4	B	705	708	parallel
Strand 5	B	730	736	parallel
Strand 6	B	739	745	anti-parallel
Strand 7	B	1063	1067	anti-parallel
Strand 8	B	1072	1076	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1084	1086	first strand
Strand 2	B	1089	1091	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1097	1099	first strand
Strand 2	B	1186	1189	parallel
Strand 3	B	1166	1174	anti-parallel
Strand 4	B	1119	1124	anti-parallel
Strand 5	B	1131	1132	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1097	1099	first strand
Strand 2	B	1186	1189	parallel
Strand 3	B	1166	1174	anti-parallel
Strand 4	B	1180	1181	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	15	first strand
Strand 2	C	3	6	anti-parallel
Strand 3	C	66	67	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	45	first strand
Strand 2	C	48	49	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	16	first strand
Strand 2	E	2	7	anti-parallel
Strand 3	E	66	70	parallel
Strand 4	E	42	45	anti-parallel
Strand 5	E	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QGI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QGI