Analysis of interatomic Contacts of Structural Units in PDB entry:
9QGO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QGO entry

There are 6 chains in PDB entry 9QGO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29ALA 55
B
 SER 29ALA 55
C
 SER 29ALA 55
a
 ASP 622GLN 641
b
 ILE 686ASP 708
c
 LYS 882VAL 956
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9QGO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 36Right-handed alpha
Helix 2
AA2
A
44 54Right-handed alpha
Helix 3
AA3
B
30 37Right-handed alpha
Helix 4
AA4
B
44 55Right-handed alpha
Helix 5
AA5
C
30 37Right-handed alpha
Helix 6
AA6
C
44 55Right-handed alpha
Helix 7
AA7
b
692 708Right-handed alpha
Helix 8
AA8
c
883 894Right-handed alpha
Helix 9
AA9
c
899 909Right-handed alpha
Helix 10
AB1
c
928 936Right-handed alpha
Helix 11
AB2
c
944 952Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9QGO.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
623 628first strand
Strand 2
a
635 640anti-parallel
Strand 3
b
687 688anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il