Analysis of interatomic Contacts of Structural Units in PDB entry:
9QGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QGW entry

There are 3 chains in PDB entry 9QGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4524PRO 4814
B
 ILE 39HIS 1049
C
 ARG 74ALA 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 57 helices in PDB entry 9QGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4524 4533Right-handed alpha
Helix 2
AA2
A
4559 4566Right-handed alpha
Helix 3
AA3
A
4572 4586Right-handed alpha
Helix 4
AA4
A
4687 4699Right-handed alpha
Helix 5
AA5
A
4703 4708Right-handed 310
Helix 6
AA6
A
4711 4715Right-handed 310
Helix 7
AA7
A
4717 4740Right-handed alpha
Helix 8
AA8
A
4740 4746Right-handed alpha
Helix 9
AA9
A
4751 4762Right-handed alpha
Helix 10
AB1
A
4762 4778Right-handed alpha
Helix 11
AB2
A
4779 4781Right-handed 310
Helix 12
AB3
A
4786 4810Right-handed alpha
Helix 13
AB4
B
40 52Right-handed alpha
Helix 14
AB5
B
52 60Right-handed alpha
Helix 15
AB6
B
70 84Right-handed alpha
Helix 16
AB7
B
97 103Right-handed 310
Helix 17
AB8
B
108 115Right-handed alpha
Helix 18
AB9
B
117 122Right-handed alpha
Helix 19
AC1
B
122 128Right-handed alpha
Helix 20
AC2
B
148 154Right-handed 310
Helix 21
AC3
B
163 176Right-handed alpha
Helix 22
AC4
B
253 257Right-handed 310
Helix 23
AC5
B
301 306Right-handed alpha
Helix 24
AC6
B
320 340Right-handed alpha
Helix 25
AC7
B
347 365Right-handed alpha
Helix 26
AC8
B
372 382Right-handed alpha
Helix 27
AC9
B
387 408Right-handed alpha
Helix 28
AD1
B
422 427Right-handed alpha
Helix 29
AD2
B
433 437Right-handed 310
Helix 30
AD3
B
443 451Right-handed alpha
Helix 31
AD4
B
451 460Right-handed alpha
Helix 32
AD5
B
469 483Right-handed alpha
Helix 33
AD6
B
502 508Right-handed 310
Helix 34
AD7
B
513 517Right-handed 310
Helix 35
AD8
B
520 533Right-handed alpha
Helix 36
AD9
B
546 552Right-handed 310
Helix 37
AE1
B
554 561Right-handed alpha
Helix 38
AE2
B
570 583Right-handed alpha
Helix 39
AE3
B
610 615Right-handed 310
Helix 40
AE4
B
623 629Right-handed alpha
Helix 41
AE5
B
633 650Right-handed alpha
Helix 42
AE6
B
650 663Right-handed alpha
Helix 43
AE7
B
665 675Right-handed alpha
Helix 44
AE8
B
681 691Right-handed alpha
Helix 45
AE9
B
695 712Right-handed alpha
Helix 46
AF1
B
712 722Right-handed alpha
Helix 47
AF2
B
751 769Right-handed alpha
Helix 48
AF3
B
774 778Right-handed 310
Helix 49
AF4
B
779 788Right-handed alpha
Helix 50
AF5
B
821 834Right-handed alpha
Helix 51
AF6
B
857 873Right-handed alpha
Helix 52
AF7
B
879 889Right-handed alpha
Helix 53
AF8
B
894 915Right-handed alpha
Helix 54
AF9
B
917 921Right-handed 310
Helix 55
AG1
B
967 980Right-handed alpha
Helix 56
AG2
B
1002 1007Right-handed 310
Helix 57
AG3
B
1008 1014Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 9QGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4537 4540first strand
Strand 2
A
4597 4602parallel
Strand 3
A
4608 4613anti-parallel
Strand 4
A
4626 4631anti-parallel
Strand 5
A
4642 4645anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4543 4545first strand
Strand 2
A
4551 4553anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 138first strand
Strand 2
B
87 91parallel
Strand 3
B
63 67parallel
Strand 4
B
156 160parallel
Strand 5
B
182 189parallel
Strand 6
B
192 198anti-parallel
Strand 7
B
416 417anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 205first strand
Strand 2
B
295 298anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 262first strand
Strand 2
B
244 250anti-parallel
Strand 3
B
285 291anti-parallel
Strand 4
B
215 221anti-parallel
Strand 5
B
227 231anti-parallel
Strand 6
B
270 273anti-parallel
Strand 7
B
264 267anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
538 541first strand
Strand 2
B
492 496parallel
Strand 3
B
462 466parallel
Strand 4
B
563 566parallel
Strand 5
B
588 594parallel
Strand 6
B
597 603anti-parallel
Strand 7
B
923 927anti-parallel
Strand 8
B
932 936anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
944 947first strand
Strand 2
B
950 952anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
958 961first strand
Strand 2
B
1043 1046parallel
Strand 3
B
1021 1028anti-parallel
Strand 4
B
985 988anti-parallel
Strand 5
B
991 994anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
958 961first strand
Strand 2
B
1043 1046parallel
Strand 3
B
1021 1028anti-parallel
Strand 4
B
1038 1039anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il