Analysis of interatomic Contacts of Structural Units in PDB entry:
9QGY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QGY entry

There are 14 chains in PDB entry 9QGY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	GLU 428
B	GLU 1	GLU 428
C	GLU 1	GLU 428
D	CYS 19	ARG 171
E	CYS 19	ARG 171
F	CYS 19	ARG 171
G	PRO 32	GLN 371
H	PRO 32	GLN 371
I	PRO 32	GLN 371
J	PRO 32	GLN 371
K	PRO 32	GLN 371
L	PRO 32	GLN 371
M	VAL 300	MET 507
N	VAL 300	ASN 506

There are 79 helices in PDB entry 9QGY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	13	Right-handed alpha
Helix 2	AA2	A	15	36	Right-handed alpha
Helix 3	AA3	A	78	146	Right-handed alpha
Helix 4	AA4	A	151	186	Right-handed alpha
Helix 5	AA5	A	198	201	Right-handed 310
Helix 6	AA6	A	209	219	Right-handed alpha
Helix 7	AA7	A	221	242	Right-handed alpha
Helix 8	AA8	A	297	364	Right-handed alpha
Helix 9	AA9	A	369	404	Right-handed alpha
Helix 10	AB1	A	409	418	Right-handed alpha
Helix 11	AB2	B	3	13	Right-handed alpha
Helix 12	AB3	B	15	36	Right-handed alpha
Helix 13	AB4	B	78	146	Right-handed alpha
Helix 14	AB5	B	151	186	Right-handed alpha
Helix 15	AB6	B	198	201	Right-handed 310
Helix 16	AB7	B	209	219	Right-handed alpha
Helix 17	AB8	B	221	242	Right-handed alpha
Helix 18	AB9	B	297	364	Right-handed alpha
Helix 19	AC1	B	369	404	Right-handed alpha
Helix 20	AC2	B	409	418	Right-handed alpha
Helix 21	AC3	C	3	13	Right-handed alpha
Helix 22	AC4	C	15	36	Right-handed alpha
Helix 23	AC5	C	78	146	Right-handed alpha
Helix 24	AC6	C	151	186	Right-handed alpha
Helix 25	AC7	C	198	201	Right-handed 310
Helix 26	AC8	C	209	219	Right-handed alpha
Helix 27	AC9	C	221	242	Right-handed alpha
Helix 28	AD1	C	297	364	Right-handed alpha
Helix 29	AD2	C	369	404	Right-handed alpha
Helix 30	AD3	C	409	418	Right-handed alpha
Helix 31	AD4	D	41	55	Right-handed alpha
Helix 32	AD5	D	64	67	Right-handed 310
Helix 33	AD6	D	69	80	Right-handed alpha
Helix 34	AD7	D	85	90	Right-handed 310
Helix 35	AD8	D	164	169	Right-handed alpha
Helix 36	AD9	E	41	55	Right-handed alpha
Helix 37	AE1	E	64	67	Right-handed 310
Helix 38	AE2	E	69	80	Right-handed alpha
Helix 39	AE3	E	85	90	Right-handed 310
Helix 40	AE4	E	164	169	Right-handed alpha
Helix 41	AE5	F	41	55	Right-handed alpha
Helix 42	AE6	F	64	67	Right-handed 310
Helix 43	AE7	F	69	80	Right-handed alpha
Helix 44	AE8	F	85	90	Right-handed 310
Helix 45	AE9	F	164	169	Right-handed alpha
Helix 46	AF1	G	94	138	Right-handed alpha
Helix 47	AF2	G	143	183	Right-handed alpha
Helix 48	AF3	G	232	236	Right-handed alpha
Helix 49	AF4	H	94	138	Right-handed alpha
Helix 50	AF5	H	143	183	Right-handed alpha
Helix 51	AF6	H	232	236	Right-handed alpha
Helix 52	AF7	I	94	138	Right-handed alpha
Helix 53	AF8	I	143	183	Right-handed alpha
Helix 54	AF9	I	232	236	Right-handed alpha
Helix 55	AG1	J	94	138	Right-handed alpha
Helix 56	AG2	J	143	183	Right-handed alpha
Helix 57	AG3	J	232	236	Right-handed alpha
Helix 58	AG4	K	94	138	Right-handed alpha
Helix 59	AG5	K	143	183	Right-handed alpha
Helix 60	AG6	K	232	236	Right-handed alpha
Helix 61	AG7	L	94	138	Right-handed alpha
Helix 62	AG8	L	143	183	Right-handed alpha
Helix 63	AG9	L	232	236	Right-handed alpha
Helix 64	AH1	M	301	305	Right-handed alpha
Helix 65	AH2	M	323	328	Right-handed alpha
Helix 66	AH3	M	335	341	Right-handed alpha
Helix 67	AH4	M	375	380	Right-handed alpha
Helix 68	AH5	M	392	397	Right-handed alpha
Helix 69	AH6	M	406	413	Right-handed alpha
Helix 70	AH7	M	456	461	Right-handed alpha
Helix 71	AH8	M	485	497	Right-handed alpha
Helix 72	AH9	N	301	307	Right-handed alpha
Helix 73	AI1	N	323	328	Right-handed alpha
Helix 74	AI2	N	335	341	Right-handed alpha
Helix 75	AI3	N	375	380	Right-handed alpha
Helix 76	AI4	N	392	397	Right-handed alpha
Helix 77	AI5	N	406	413	Right-handed alpha
Helix 78	AI6	N	456	461	Right-handed alpha
Helix 79	AI7	N	482	497	Right-handed alpha

There are 46 sheets in PDB entry 9QGY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	76	first strand
Strand 2	C	247	253	anti-parallel
Strand 3	C	279	294	anti-parallel
Strand 4	C	61	76	first strand
Strand 5	C	41	55	anti-parallel
Strand 6	A	277	294	anti-parallel
Strand 7	A	247	262	anti-parallel
Strand 8	A	61	76	anti-parallel
Strand 9	A	41	55	anti-parallel
Strand 10	B	277	294	anti-parallel
Strand 11	B	247	262	anti-parallel
Strand 12	B	61	76	anti-parallel
Strand 13	B	41	55	anti-parallel
Strand 14	C	279	294	anti-parallel
Strand 15	C	256	262	anti-parallel
Strand 16	C	279	294	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	196	first strand
Strand 2	A	419	424	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	196	first strand
Strand 2	B	419	424	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	196	first strand
Strand 2	C	419	424	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	105	first strand
Strand 2	D	119	126	anti-parallel
Strand 3	D	131	141	anti-parallel
Strand 4	D	144	151	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	105	first strand
Strand 2	E	119	127	anti-parallel
Strand 3	E	130	141	anti-parallel
Strand 4	E	144	151	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	105	first strand
Strand 2	F	119	127	anti-parallel
Strand 3	F	130	141	anti-parallel
Strand 4	F	144	152	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	38	39	first strand
Strand 2	G	360	361	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	82	83	first strand
Strand 2	G	192	197	anti-parallel
Strand 3	G	213	230	anti-parallel
Strand 4	G	45	65	anti-parallel
Strand 5	G	293	304	anti-parallel
Strand 6	G	242	247	anti-parallel
Strand 7	G	255	258	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	82	83	first strand
Strand 2	G	192	197	anti-parallel
Strand 3	G	213	230	anti-parallel
Strand 4	G	274	282	anti-parallel
Strand 5	G	261	262	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	185	187	first strand
Strand 2	G	88	92	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	204	205	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	308	310	first strand
Strand 2	G	347	352	anti-parallel
Strand 3	G	339	342	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	325	327	first strand
Strand 2	G	333	335	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	39	first strand
Strand 2	H	360	361	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	44	first strand
Strand 2	H	306	307	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	82	83	first strand
Strand 2	H	192	197	anti-parallel
Strand 3	H	213	230	anti-parallel
Strand 4	H	272	282	anti-parallel
Strand 5	H	261	262	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	255	258	first strand
Strand 2	H	242	247	anti-parallel
Strand 3	H	293	299	anti-parallel
Strand 4	H	49	65	anti-parallel
Strand 5	H	213	230	anti-parallel
Strand 6	H	272	282	anti-parallel
Strand 7	H	267	269	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	185	187	first strand
Strand 2	H	88	92	anti-parallel
Strand 3	H	70	75	anti-parallel
Strand 4	H	204	205	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	314	318	first strand
Strand 2	H	321	326	anti-parallel
Strand 3	H	334	338	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	38	40	first strand
Strand 2	I	359	361	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	82	83	first strand
Strand 2	I	192	197	anti-parallel
Strand 3	I	213	230	anti-parallel
Strand 4	I	272	282	anti-parallel
Strand 5	I	261	262	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	255	258	first strand
Strand 2	I	242	247	anti-parallel
Strand 3	I	293	303	anti-parallel
Strand 4	I	46	65	anti-parallel
Strand 5	I	213	230	anti-parallel
Strand 6	I	272	282	anti-parallel
Strand 7	I	267	269	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	185	187	first strand
Strand 2	I	88	92	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	204	205	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	308	310	first strand
Strand 2	I	347	352	anti-parallel
Strand 3	I	333	340	anti-parallel
Strand 4	I	322	327	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	38	39	first strand
Strand 2	J	360	361	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	82	83	first strand
Strand 2	J	192	197	anti-parallel
Strand 3	J	213	230	anti-parallel
Strand 4	J	273	282	anti-parallel
Strand 5	J	261	262	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	255	258	first strand
Strand 2	J	242	247	anti-parallel
Strand 3	J	293	306	anti-parallel
Strand 4	J	44	65	anti-parallel
Strand 5	J	213	230	anti-parallel
Strand 6	J	273	282	anti-parallel
Strand 7	J	267	268	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	185	187	first strand
Strand 2	J	88	92	anti-parallel
Strand 3	J	70	75	anti-parallel
Strand 4	J	204	205	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	308	309	first strand
Strand 2	J	348	352	anti-parallel
Strand 3	J	334	340	anti-parallel
Strand 4	J	321	326	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	38	39	first strand
Strand 2	K	359	361	anti-parallel
Strand 3	K	323	327	anti-parallel
Strand 4	K	333	337	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	82	83	first strand
Strand 2	K	192	197	anti-parallel
Strand 3	K	213	230	anti-parallel
Strand 4	K	273	282	anti-parallel
Strand 5	K	261	262	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	255	258	first strand
Strand 2	K	242	247	anti-parallel
Strand 3	K	293	299	anti-parallel
Strand 4	K	49	65	anti-parallel
Strand 5	K	213	230	anti-parallel
Strand 6	K	273	282	anti-parallel
Strand 7	K	267	268	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	185	187	first strand
Strand 2	K	88	92	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	204	205	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	308	310	first strand
Strand 2	K	347	352	anti-parallel
Strand 3	K	339	340	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	38	40	first strand
Strand 2	L	359	361	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	82	83	first strand
Strand 2	L	192	197	anti-parallel
Strand 3	L	213	230	anti-parallel
Strand 4	L	272	282	anti-parallel
Strand 5	L	261	262	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	255	258	first strand
Strand 2	L	242	247	anti-parallel
Strand 3	L	293	303	anti-parallel
Strand 4	L	46	65	anti-parallel
Strand 5	L	213	230	anti-parallel
Strand 6	L	272	282	anti-parallel
Strand 7	L	267	269	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	185	187	first strand
Strand 2	L	88	92	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	204	205	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	307	310	first strand
Strand 2	L	347	352	anti-parallel
Strand 3	L	339	343	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	324	327	first strand
Strand 2	L	333	336	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	384	386	first strand
Strand 2	M	429	437	anti-parallel
Strand 3	M	423	426	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	384	386	first strand
Strand 2	M	429	437	anti-parallel
Strand 3	M	402	405	parallel
Strand 4	M	451	455	anti-parallel
Strand 5	M	368	372	parallel
Strand 6	M	345	353	anti-parallel
Strand 7	M	471	476	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	345	351	first strand
Strand 2	N	471	476	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	353	360	first strand
Strand 2	N	363	370	anti-parallel
Strand 3	N	451	452	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	384	386	first strand
Strand 2	N	435	437	anti-parallel
Strand 3	N	403	405	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	422	426	first strand
Strand 2	N	429	433	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QGY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QGY