Analysis of interatomic Contacts of Structural Units in PDB entry:
9QGZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QGZ entry

There are 4 chains in PDB entry 9QGZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 3GLU 460
B
GLY 3GLU 460
C
GLY 3GLU 460
D
GLY 3GLU 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are147 helices in PDB entry 9QGZ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
3 13Right-handed alpha
Helix 2
AA2
A
20 24Right-handed 310
Helix 3
AA3
A
48 61Right-handed alpha
Helix 4
AA4
A
91 93Right-handed 310
Helix 5
AA5
A
113 124Right-handed alpha
Helix 6
AA6
A
139 147Right-handed alpha
Helix 7
AA7
A
152 157Right-handed alpha
Helix 8
AA8
A
158 163Right-handed 310
Helix 9
AA9
A
190 196Right-handed alpha
Helix 10
AB1
A
233 235Right-handed 310
Helix 11
AB2
A
236 241Right-handed alpha
Helix 12
AB3
A
254 262Right-handed alpha
Helix 13
AB4
A
285 295Right-handed alpha
Helix 14
AB5
A
296 301Right-handed alpha
Helix 15
AB6
A
317 325Right-handed alpha
Helix 16
AB7
A
344 346Right-handed 310
Helix 17
AB8
A
347 362Right-handed alpha
Helix 18
AB9
A
387 409Right-handed alpha
Helix 19
AC1
A
422 446Right-handed alpha
Helix 20
AC2
B
4 13Right-handed alpha
Helix 21
AC3
B
20 24Right-handed 310
Helix 22
AC4
B
48 61Right-handed alpha
Helix 23
AC5
B
91 93Right-handed 310
Helix 24
AC6
B
113 123Right-handed alpha
Helix 25
AC7
B
139 147Right-handed alpha
Helix 26
AC8
B
152 157Right-handed alpha
Helix 27
AC9
B
159 161Right-handed 310
Helix 28
AD1
B
190 196Right-handed alpha
Helix 29
AD2
B
238 243Right-handed alpha
Helix 30
AD3
B
254 262Right-handed alpha
Helix 31
AD4
B
293 302Right-handed alpha
Helix 32
AD5
B
317 325Right-handed alpha
Helix 33
AD6
B
344 346Right-handed 310
Helix 34
AD7
B
347 362Right-handed alpha
Helix 35
AD8
B
387 409Right-handed alpha
Helix 36
AD9
B
422 446Right-handed alpha
Helix 37
AE1
C
4 12Right-handed alpha
Helix 38
AE2
C
20 24Right-handed 310
Helix 39
AE3
C
48 61Right-handed alpha
Helix 40
AE4
C
91 93Right-handed 310
Helix 41
AE5
C
113 124Right-handed alpha
Helix 42
AE6
C
139 147Right-handed alpha
Helix 43
AE7
C
152 157Right-handed alpha
Helix 44
AE8
C
159 161Right-handed 310
Helix 45
AE9
C
190 196Right-handed alpha
Helix 46
AF1
C
254 262Right-handed alpha
Helix 47
AF2
C
284 287Right-handed 310
Helix 48
AF3
C
288 293Right-handed alpha
Helix 49
AF4
C
293 301Right-handed alpha
Helix 50
AF5
C
312 317Right-handed alpha
Helix 51
AF6
C
317 325Right-handed alpha
Helix 52
AF7
C
325 330Right-handed alpha
Helix 53
AF8
C
344 346Right-handed 310
Helix 54
AF9
C
347 361Right-handed alpha
Helix 55
AG1
C
388 409Right-handed alpha
Helix 56
AG2
C
422 446Right-handed alpha
Helix 57
AG3
D
5 13Right-handed alpha
Helix 58
AG4
D
24 28Right-handed 310
Helix 59
AG5
D
48 61Right-handed alpha
Helix 60
AG6
D
91 93Right-handed 310
Helix 61
AG7
D
113 124Right-handed alpha
Helix 62
AG8
D
139 147Right-handed alpha
Helix 63
AG9
D
152 157Right-handed alpha
Helix 64
AH1
D
158 161Right-handed 310
Helix 65
AH2
D
190 196Right-handed alpha
Helix 66
AH3
D
231 236Right-handed alpha
Helix 67
AH4
D
236 243Right-handed alpha
Helix 68
AH5
D
254 262Right-handed alpha
Helix 69
AH6
D
284 290Right-handed 310
Helix 70
AH7
D
293 301Right-handed alpha
Helix 71
AH8
D
315 325Right-handed alpha
Helix 72
AH9
D
344 346Right-handed 310
Helix 73
AI1
D
347 359Right-handed alpha
Helix 74
AI2
D
388 409Right-handed alpha
Helix 75
AI3
D
422 446Right-handed alpha
Helix 76
AI4
E
4 13Right-handed alpha
Helix 77
AI5
E
20 25Right-handed alpha
Helix 78
AI6
E
26 28Right-handed 310
Helix 79
AI7
E
48 61Right-handed alpha
Helix 80
AI8
E
91 93Right-handed 310
Helix 81
AI9
E
113 123Right-handed alpha
Helix 82
AJ1
E
139 147Right-handed alpha
Helix 83
AJ2
E
152 157Right-handed alpha
Helix 84
AJ3
E
158 161Right-handed 310
Helix 85
AJ4
E
190 196Right-handed alpha
Helix 86
AJ5
E
236 241Right-handed alpha
Helix 87
AJ6
E
254 262Right-handed alpha
Helix 88
AJ7
E
284 287Right-handed 310
Helix 89
AJ8
E
288 293Right-handed alpha
Helix 90
AJ9
E
296 301Right-handed alpha
Helix 91
AK1
E
315 325Right-handed alpha
Helix 92
AK2
E
330 334Right-handed 310
Helix 93
AK3
E
344 346Right-handed 310
Helix 94
AK4
E
347 359Right-handed alpha
Helix 95
AK5
E
387 409Right-handed alpha
Helix 96
AK6
E
422 446Right-handed alpha
Helix 97
AK7
F
4 13Right-handed alpha
Helix 98
AK8
F
24 28Right-handed 310
Helix 99
AK9
F
48 61Right-handed alpha
Helix 100
AL1
F
91 93Right-handed 310
Helix 101
AL2
F
113 123Right-handed alpha
Helix 102
AL3
F
139 147Right-handed alpha
Helix 103
AL4
F
150 155Right-handed 310
Helix 104
AL5
F
158 161Right-handed 310
Helix 105
AL6
F
190 196Right-handed alpha
Helix 106
AL7
F
254 262Right-handed alpha
Helix 107
AL8
F
285 301Right-handed alpha
Helix 108
AL9
F
320 325Right-handed alpha
Helix 109
AM1
F
344 346Right-handed 310
Helix 110
AM2
F
347 361Right-handed alpha
Helix 111
AM3
F
389 409Right-handed alpha
Helix 112
AM4
F
422 446Right-handed alpha
Helix 113
AM5
G
5 13Right-handed alpha
Helix 114
AM6
G
20 24Right-handed 310
Helix 115
AM7
G
48 61Right-handed alpha
Helix 116
AM8
G
91 93Right-handed 310
Helix 117
AM9
G
113 124Right-handed alpha
Helix 118
AN1
G
139 147Right-handed alpha
Helix 119
AN2
G
152 157Right-handed alpha
Helix 120
AN3
G
158 161Right-handed 310
Helix 121
AN4
G
190 196Right-handed alpha
Helix 122
AN5
G
234 239Right-handed alpha
Helix 123
AN6
G
254 265Right-handed alpha
Helix 124
AN7
G
286 293Right-handed alpha
Helix 125
AN8
G
296 301Right-handed alpha
Helix 126
AN9
G
314 325Right-handed alpha
Helix 127
AO1
G
325 330Right-handed alpha
Helix 128
AO2
G
344 346Right-handed 310
Helix 129
AO3
G
347 361Right-handed alpha
Helix 130
AO4
G
387 409Right-handed alpha
Helix 131
AO5
G
422 446Right-handed alpha
Helix 132
AO6
H
4 12Right-handed alpha
Helix 133
AO7
H
20 25Right-handed alpha
Helix 134
AO8
H
26 29Right-handed 310
Helix 135
AO9
H
48 63Right-handed alpha
Helix 136
AP1
H
113 122Right-handed alpha
Helix 137
AP2
H
123 125Right-handed 310
Helix 138
AP3
H
139 147Right-handed alpha
Helix 139
AP4
H
152 157Right-handed alpha
Helix 140
AP5
H
159 161Right-handed 310
Helix 141
AP6
H
190 196Right-handed alpha
Helix 142
AP7
H
233 235Right-handed 310
Helix 143
AP8
H
236 244Right-handed alpha
Helix 144
AP9
H
344 346Right-handed 310
Helix 145
AQ1
H
347 356Right-handed alpha
Helix 146
AQ2
H
396 409Right-handed alpha
Helix 147
AQ3
H
422 446Right-handed alpha
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There are 42 sheets in PDB entry 9QGZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 18first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
86 89parallel
Strand 4
A
66 69parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
96 100first strand
Strand 2
A
105 108anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
126 127first strand
Strand 2
A
213 214anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
174 179first strand
Strand 2
A
165 170anti-parallel
Strand 3
A
204 208anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
221 222first strand
Strand 2
A
279 281anti-parallel
Strand 3
A
249 250anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
226 227first strand
Strand 2
A
275 276anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
252 253first strand
Strand 2
A
367 371anti-parallel
Strand 3
A
376 382anti-parallel
Strand 4
A
336 338anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
252 253first strand
Strand 2
A
367 371anti-parallel
Strand 3
A
376 382anti-parallel
Strand 4
A
341 342anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
17 18first strand
Strand 2
B
42 44anti-parallel
Strand 3
B
86 89parallel
Strand 4
B
66 69parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
96 100first strand
Strand 2
B
105 108anti-parallel
Strand 3
B
204 211anti-parallel
Strand 4
B
163 170anti-parallel
Strand 5
B
174 179anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
126 127first strand
Strand 2
B
213 214anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
221 223first strand
Strand 2
B
278 281anti-parallel
Strand 3
B
250 253anti-parallel
Strand 4
B
367 371anti-parallel
Strand 5
B
376 382anti-parallel
Strand 6
B
336 338anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
221 223first strand
Strand 2
B
278 281anti-parallel
Strand 3
B
250 253anti-parallel
Strand 4
B
367 371anti-parallel
Strand 5
B
376 382anti-parallel
Strand 6
B
341 342anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
17 18first strand
Strand 2
C
42 44anti-parallel
Strand 3
C
86 89parallel
Strand 4
C
66 69parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
96 100first strand
Strand 2
C
105 108anti-parallel
Strand 3
C
204 211anti-parallel
Strand 4
C
163 169anti-parallel
Strand 5
C
175 179anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
126 127first strand
Strand 2
C
213 214anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
252 253first strand
Strand 2
C
367 371anti-parallel
Strand 3
C
376 382anti-parallel
Strand 4
C
336 338anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
252 253first strand
Strand 2
C
367 371anti-parallel
Strand 3
C
376 382anti-parallel
Strand 4
C
341 342anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
17 18first strand
Strand 2
D
42 44anti-parallel
Strand 3
D
86 89parallel
Strand 4
D
66 69parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
96 100first strand
Strand 2
D
105 108anti-parallel
Strand 3
D
204 211anti-parallel
Strand 4
D
163 170anti-parallel
Strand 5
D
174 179anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
126 127first strand
Strand 2
D
213 214anti-parallel
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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
276 279first strand
Strand 2
D
250 253anti-parallel
Strand 3
D
367 371anti-parallel
Strand 4
D
376 382anti-parallel
Strand 5
D
336 338anti-parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
276 279first strand
Strand 2
D
250 253anti-parallel
Strand 3
D
367 371anti-parallel
Strand 4
D
376 382anti-parallel
Strand 5
D
341 342anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
17 18first strand
Strand 2
E
42 44anti-parallel
Strand 3
E
86 89parallel
Strand 4
E
66 69parallel
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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
96 100first strand
Strand 2
E
105 108anti-parallel
Strand 3
E
204 211anti-parallel
Strand 4
E
163 170anti-parallel
Strand 5
E
174 179anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
126 127first strand
Strand 2
E
213 214anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
249 251first strand
Strand 2
E
278 280anti-parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
336 338first strand
Strand 2
E
376 382anti-parallel
Strand 3
E
341 342anti-parallel
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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
336 338first strand
Strand 2
E
376 382anti-parallel
Strand 3
E
367 371anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
17 18first strand
Strand 2
F
42 44anti-parallel
Strand 3
F
86 89parallel
Strand 4
F
66 69parallel
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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
96 100first strand
Strand 2
F
105 108anti-parallel
Strand 3
F
204 211anti-parallel
Strand 4
F
163 170anti-parallel
Strand 5
F
174 179anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
126 127first strand
Strand 2
F
213 214anti-parallel
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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
336 338first strand
Strand 2
F
376 382anti-parallel
Strand 3
F
341 342anti-parallel
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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
336 338first strand
Strand 2
F
376 382anti-parallel
Strand 3
F
366 371anti-parallel
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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
17 18first strand
Strand 2
G
42 44anti-parallel
Strand 3
G
86 89parallel
Strand 4
G
66 69parallel
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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
96 100first strand
Strand 2
G
105 108anti-parallel
Strand 3
G
204 211anti-parallel
Strand 4
G
163 170anti-parallel
Strand 5
G
174 179anti-parallel
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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
126 127first strand
Strand 2
G
213 214anti-parallel
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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
276 279first strand
Strand 2
G
250 253anti-parallel
Strand 3
G
366 371anti-parallel
Strand 4
G
376 382anti-parallel
Strand 5
G
336 338anti-parallel
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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
276 279first strand
Strand 2
G
250 253anti-parallel
Strand 3
G
366 371anti-parallel
Strand 4
G
376 382anti-parallel
Strand 5
G
341 342anti-parallel
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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
17 18first strand
Strand 2
H
42 44anti-parallel
Strand 3
H
86 89parallel
Strand 4
H
66 69parallel
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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
96 100first strand
Strand 2
H
105 108anti-parallel
Strand 3
H
204 211anti-parallel
Strand 4
H
163 170anti-parallel
Strand 5
H
174 179anti-parallel
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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
341 342first strand
Strand 2
H
376 378anti-parallel
Strand 3
H
369 371anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il