Analysis of interatomic Contacts of Structural Units in PDB entry:
9QH6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QH6 entry

There are 7 chains in PDB entry 9QH6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 15	PHE 269
B	ASP 14	GLY 270
C	ALA 15	GLY 270
D	ALA 15	PHE 269
E	ASP 14	GLY 270
F	PHE 17	PHE 269
G	GLY 347	ALA 638

There are 82 helices in PDB entry 9QH6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	34	Right-handed alpha
Helix 2	AA2	A	47	60	Right-handed alpha
Helix 3	AA3	A	73	78	Right-handed alpha
Helix 4	AA4	A	93	102	Right-handed alpha
Helix 5	AA5	A	110	113	Right-handed 310
Helix 6	AA6	A	114	120	Right-handed alpha
Helix 7	AA7	A	164	169	Right-handed alpha
Helix 8	AA8	A	180	192	Right-handed alpha
Helix 9	AA9	A	195	212	Right-handed alpha
Helix 10	AB1	A	222	236	Right-handed alpha
Helix 11	AB2	A	238	247	Right-handed alpha
Helix 12	AB3	A	254	269	Right-handed alpha
Helix 13	AB4	B	23	34	Right-handed alpha
Helix 14	AB5	B	47	60	Right-handed alpha
Helix 15	AB6	B	73	78	Right-handed alpha
Helix 16	AB7	B	93	102	Right-handed alpha
Helix 17	AB8	B	110	113	Right-handed 310
Helix 18	AB9	B	116	125	Right-handed 310
Helix 19	AC1	B	164	169	Right-handed alpha
Helix 20	AC2	B	180	193	Right-handed alpha
Helix 21	AC3	B	195	211	Right-handed alpha
Helix 22	AC4	B	222	236	Right-handed alpha
Helix 23	AC5	B	238	247	Right-handed alpha
Helix 24	AC6	B	254	269	Right-handed alpha
Helix 25	AC7	C	24	35	Right-handed alpha
Helix 26	AC8	C	47	60	Right-handed alpha
Helix 27	AC9	C	73	78	Right-handed alpha
Helix 28	AD1	C	93	102	Right-handed alpha
Helix 29	AD2	C	110	113	Right-handed 310
Helix 30	AD3	C	117	126	Right-handed 310
Helix 31	AD4	C	164	169	Right-handed alpha
Helix 32	AD5	C	180	193	Right-handed alpha
Helix 33	AD6	C	195	212	Right-handed alpha
Helix 34	AD7	C	222	236	Right-handed alpha
Helix 35	AD8	C	238	247	Right-handed alpha
Helix 36	AD9	C	254	270	Right-handed alpha
Helix 37	AE1	D	23	34	Right-handed alpha
Helix 38	AE2	D	47	60	Right-handed alpha
Helix 39	AE3	D	74	78	Right-handed alpha
Helix 40	AE4	D	93	102	Right-handed alpha
Helix 41	AE5	D	109	113	Right-handed 310
Helix 42	AE6	D	116	122	Right-handed 310
Helix 43	AE7	D	164	169	Right-handed alpha
Helix 44	AE8	D	180	193	Right-handed alpha
Helix 45	AE9	D	195	212	Right-handed alpha
Helix 46	AF1	D	222	236	Right-handed alpha
Helix 47	AF2	D	238	248	Right-handed alpha
Helix 48	AF3	D	254	269	Right-handed alpha
Helix 49	AF4	E	23	34	Right-handed alpha
Helix 50	AF5	E	47	60	Right-handed alpha
Helix 51	AF6	E	73	78	Right-handed alpha
Helix 52	AF7	E	93	102	Right-handed alpha
Helix 53	AF8	E	109	113	Right-handed 310
Helix 54	AF9	E	114	116	Right-handed 310
Helix 55	AG1	E	117	125	Right-handed alpha
Helix 56	AG2	E	164	169	Right-handed alpha
Helix 57	AG3	E	180	193	Right-handed alpha
Helix 58	AG4	E	195	212	Right-handed alpha
Helix 59	AG5	E	222	236	Right-handed alpha
Helix 60	AG6	E	238	248	Right-handed alpha
Helix 61	AG7	E	254	269	Right-handed alpha
Helix 62	AG8	F	23	35	Right-handed alpha
Helix 63	AG9	F	48	60	Right-handed alpha
Helix 64	AH1	F	73	78	Right-handed alpha
Helix 65	AH2	F	93	102	Right-handed alpha
Helix 66	AH3	F	114	116	Right-handed 310
Helix 67	AH4	F	117	126	Right-handed alpha
Helix 68	AH5	F	164	169	Right-handed alpha
Helix 69	AH6	F	180	193	Right-handed alpha
Helix 70	AH7	F	196	212	Right-handed alpha
Helix 71	AH8	F	222	236	Right-handed alpha
Helix 72	AH9	F	238	248	Right-handed alpha
Helix 73	AI1	F	254	269	Right-handed alpha
Helix 74	AI2	G	383	400	Right-handed alpha
Helix 75	AI3	G	417	431	Right-handed alpha
Helix 76	AI4	G	469	489	Right-handed alpha
Helix 77	AI5	G	519	527	Right-handed alpha
Helix 78	AI6	G	535	550	Right-handed alpha
Helix 79	AI7	G	573	590	Right-handed alpha
Helix 80	AI8	G	606	611	Right-handed alpha
Helix 81	AI9	G	621	623	Right-handed 310
Helix 82	AJ1	G	624	638	Right-handed alpha

There are 20 sheets in PDB entry 9QH6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	67	first strand
Strand 2	A	104	108	parallel
Strand 3	A	147	152	parallel
Strand 4	A	38	41	parallel
Strand 5	A	172	175	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	84	first strand
Strand 2	A	87	92	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	138	141	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	67	first strand
Strand 2	B	104	108	parallel
Strand 3	B	147	152	parallel
Strand 4	B	38	41	parallel
Strand 5	B	172	175	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	83	first strand
Strand 2	B	88	92	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	133	first strand
Strand 2	B	138	141	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	67	first strand
Strand 2	C	104	108	parallel
Strand 3	C	147	152	parallel
Strand 4	C	38	41	parallel
Strand 5	C	172	175	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	84	first strand
Strand 2	C	87	92	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	133	first strand
Strand 2	C	138	141	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	67	first strand
Strand 2	D	104	108	parallel
Strand 3	D	147	152	parallel
Strand 4	D	38	41	parallel
Strand 5	D	172	175	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	83	first strand
Strand 2	D	88	92	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	133	first strand
Strand 2	D	138	141	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	67	first strand
Strand 2	E	104	108	parallel
Strand 3	E	147	152	parallel
Strand 4	E	38	41	parallel
Strand 5	E	172	175	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	83	first strand
Strand 2	E	88	92	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	133	first strand
Strand 2	E	138	141	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	66	first strand
Strand 2	F	104	107	parallel
Strand 3	F	147	152	parallel
Strand 4	F	38	41	parallel
Strand 5	F	172	175	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	84	first strand
Strand 2	F	87	92	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	130	133	first strand
Strand 2	F	138	141	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	348	351	first strand
Strand 2	G	366	372	anti-parallel
Strand 3	G	505	511	parallel
Strand 4	G	491	499	anti-parallel
Strand 5	G	449	456	parallel
Strand 6	G	554	561	parallel
Strand 7	G	593	598	parallel
Strand 8	G	616	618	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	406	410	first strand
Strand 2	G	439	442	anti-parallel
Strand 3	G	415	416	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QH6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QH6