Analysis of interatomic Contacts of Structural Units in PDB entry:
9QH7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QH7 entry

There are 6 chains in PDB entry 9QH7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 16	PHE 269
B	ALA 15	GLY 270
C	ASP 14	GLY 270
D	ALA 15	GLY 270
E	ALA 15	GLY 270
F	GLU 24	MET 174

There are 63 helices in PDB entry 9QH7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	34	Right-handed alpha
Helix 2	AA2	A	47	60	Right-handed alpha
Helix 3	AA3	A	73	78	Right-handed alpha
Helix 4	AA4	A	95	101	Right-handed alpha
Helix 5	AA5	A	114	120	Right-handed alpha
Helix 6	AA6	A	121	125	Right-handed 310
Helix 7	AA7	A	164	171	Right-handed alpha
Helix 8	AA8	A	180	193	Right-handed alpha
Helix 9	AA9	A	195	212	Right-handed alpha
Helix 10	AB1	A	222	236	Right-handed alpha
Helix 11	AB2	A	238	247	Right-handed alpha
Helix 12	AB3	A	254	269	Right-handed alpha
Helix 13	AB4	B	23	34	Right-handed alpha
Helix 14	AB5	B	47	60	Right-handed alpha
Helix 15	AB6	B	73	78	Right-handed alpha
Helix 16	AB7	B	93	102	Right-handed alpha
Helix 17	AB8	B	116	126	Right-handed 310
Helix 18	AB9	B	164	169	Right-handed alpha
Helix 19	AC1	B	180	193	Right-handed alpha
Helix 20	AC2	B	195	211	Right-handed alpha
Helix 21	AC3	B	222	236	Right-handed alpha
Helix 22	AC4	B	238	248	Right-handed alpha
Helix 23	AC5	B	254	269	Right-handed alpha
Helix 24	AC6	C	23	34	Right-handed alpha
Helix 25	AC7	C	47	60	Right-handed alpha
Helix 26	AC8	C	73	78	Right-handed alpha
Helix 27	AC9	C	93	102	Right-handed alpha
Helix 28	AD1	C	116	126	Right-handed 310
Helix 29	AD2	C	164	169	Right-handed alpha
Helix 30	AD3	C	180	193	Right-handed alpha
Helix 31	AD4	C	195	211	Right-handed alpha
Helix 32	AD5	C	222	236	Right-handed alpha
Helix 33	AD6	C	238	247	Right-handed alpha
Helix 34	AD7	C	254	269	Right-handed alpha
Helix 35	AD8	D	23	34	Right-handed alpha
Helix 36	AD9	D	47	60	Right-handed alpha
Helix 37	AE1	D	73	78	Right-handed alpha
Helix 38	AE2	D	93	102	Right-handed alpha
Helix 39	AE3	D	109	113	Right-handed 310
Helix 40	AE4	D	116	125	Right-handed 310
Helix 41	AE5	D	164	169	Right-handed alpha
Helix 42	AE6	D	180	193	Right-handed alpha
Helix 43	AE7	D	195	211	Right-handed alpha
Helix 44	AE8	D	222	236	Right-handed alpha
Helix 45	AE9	D	238	247	Right-handed alpha
Helix 46	AF1	D	254	270	Right-handed alpha
Helix 47	AF2	E	23	34	Right-handed alpha
Helix 48	AF3	E	47	60	Right-handed alpha
Helix 49	AF4	E	73	78	Right-handed alpha
Helix 50	AF5	E	93	102	Right-handed alpha
Helix 51	AF6	E	116	126	Right-handed 310
Helix 52	AF7	E	164	169	Right-handed alpha
Helix 53	AF8	E	180	192	Right-handed alpha
Helix 54	AF9	E	195	210	Right-handed alpha
Helix 55	AG1	E	222	236	Right-handed alpha
Helix 56	AG2	E	240	247	Right-handed alpha
Helix 57	AG3	E	254	270	Right-handed alpha
Helix 58	AG4	F	25	34	Right-handed alpha
Helix 59	AG5	F	47	60	Right-handed alpha
Helix 60	AG6	F	73	79	Right-handed alpha
Helix 61	AG7	F	93	102	Right-handed alpha
Helix 62	AG8	F	116	125	Right-handed alpha
Helix 63	AG9	F	165	169	Right-handed alpha

There are 18 sheets in PDB entry 9QH7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	66	first strand
Strand 2	A	104	107	parallel
Strand 3	A	147	152	parallel
Strand 4	A	38	41	parallel
Strand 5	A	172	175	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	88	91	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	138	140	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	66	first strand
Strand 2	B	104	107	parallel
Strand 3	B	147	152	parallel
Strand 4	B	38	41	parallel
Strand 5	B	172	175	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	87	92	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	133	first strand
Strand 2	B	138	141	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	66	first strand
Strand 2	C	104	107	parallel
Strand 3	C	147	152	parallel
Strand 4	C	38	41	parallel
Strand 5	C	172	175	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	84	first strand
Strand 2	C	87	92	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	133	first strand
Strand 2	C	138	141	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	66	first strand
Strand 2	D	104	107	parallel
Strand 3	D	147	152	parallel
Strand 4	D	38	41	parallel
Strand 5	D	172	175	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	84	first strand
Strand 2	D	87	92	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	133	first strand
Strand 2	D	138	141	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	66	first strand
Strand 2	E	104	107	parallel
Strand 3	E	147	152	parallel
Strand 4	E	38	41	parallel
Strand 5	E	172	175	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	83	first strand
Strand 2	E	88	92	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	133	first strand
Strand 2	E	138	141	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	105	106	first strand
Strand 2	F	148	150	parallel
Strand 3	F	38	40	parallel
Strand 4	F	172	174	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	84	first strand
Strand 2	F	87	90	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	130	133	first strand
Strand 2	F	138	141	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QH7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QH7