Analysis of interatomic Contacts of Structural Units in PDB entry:
9QH8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QH8 entry

There are 7 chains in PDB entry 9QH8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 17	GLY 270
B	PHE 17	GLY 270
C	PRO 16	GLY 270
D	ALA 15	GLY 270
E	ALA 15	GLY 270
F	TYR 18	GLY 270
G	PRO 382	ALA 638

There are 87 helices in PDB entry 9QH8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	34	Right-handed alpha
Helix 2	AA2	A	47	60	Right-handed alpha
Helix 3	AA3	A	73	78	Right-handed alpha
Helix 4	AA4	A	93	102	Right-handed alpha
Helix 5	AA5	A	114	116	Right-handed 310
Helix 6	AA6	A	117	126	Right-handed alpha
Helix 7	AA7	A	164	170	Right-handed alpha
Helix 8	AA8	A	180	193	Right-handed alpha
Helix 9	AA9	A	195	212	Right-handed alpha
Helix 10	AB1	A	222	235	Right-handed alpha
Helix 11	AB2	A	238	247	Right-handed alpha
Helix 12	AB3	A	247	252	Right-handed alpha
Helix 13	AB4	A	254	269	Right-handed alpha
Helix 14	AB5	B	23	35	Right-handed alpha
Helix 15	AB6	B	47	60	Right-handed alpha
Helix 16	AB7	B	73	78	Right-handed alpha
Helix 17	AB8	B	93	102	Right-handed alpha
Helix 18	AB9	B	114	119	Right-handed alpha
Helix 19	AC1	B	120	125	Right-handed 310
Helix 20	AC2	B	164	169	Right-handed alpha
Helix 21	AC3	B	180	193	Right-handed alpha
Helix 22	AC4	B	195	212	Right-handed alpha
Helix 23	AC5	B	222	236	Right-handed alpha
Helix 24	AC6	B	238	247	Right-handed alpha
Helix 25	AC7	B	247	252	Right-handed alpha
Helix 26	AC8	B	255	270	Right-handed alpha
Helix 27	AC9	C	23	34	Right-handed alpha
Helix 28	AD1	C	47	60	Right-handed alpha
Helix 29	AD2	C	73	78	Right-handed alpha
Helix 30	AD3	C	93	101	Right-handed alpha
Helix 31	AD4	C	110	113	Right-handed 310
Helix 32	AD5	C	116	120	Right-handed 310
Helix 33	AD6	C	121	126	Right-handed alpha
Helix 34	AD7	C	164	169	Right-handed alpha
Helix 35	AD8	C	180	193	Right-handed alpha
Helix 36	AD9	C	195	212	Right-handed alpha
Helix 37	AE1	C	222	236	Right-handed alpha
Helix 38	AE2	C	238	247	Right-handed alpha
Helix 39	AE3	C	248	252	Right-handed 310
Helix 40	AE4	C	255	269	Right-handed alpha
Helix 41	AE5	D	23	34	Right-handed alpha
Helix 42	AE6	D	47	60	Right-handed alpha
Helix 43	AE7	D	73	78	Right-handed alpha
Helix 44	AE8	D	93	101	Right-handed alpha
Helix 45	AE9	D	109	113	Right-handed 310
Helix 46	AF1	D	114	119	Right-handed alpha
Helix 47	AF2	D	121	126	Right-handed alpha
Helix 48	AF3	D	158	162	Right-handed 310
Helix 49	AF4	D	164	169	Right-handed alpha
Helix 50	AF5	D	180	193	Right-handed alpha
Helix 51	AF6	D	195	212	Right-handed alpha
Helix 52	AF7	D	222	236	Right-handed alpha
Helix 53	AF8	D	238	247	Right-handed alpha
Helix 54	AF9	D	254	269	Right-handed alpha
Helix 55	AG1	E	23	34	Right-handed alpha
Helix 56	AG2	E	47	60	Right-handed alpha
Helix 57	AG3	E	73	79	Right-handed alpha
Helix 58	AG4	E	93	102	Right-handed alpha
Helix 59	AG5	E	114	116	Right-handed 310
Helix 60	AG6	E	117	122	Right-handed alpha
Helix 61	AG7	E	123	125	Right-handed 310
Helix 62	AG8	E	164	169	Right-handed alpha
Helix 63	AG9	E	180	193	Right-handed alpha
Helix 64	AH1	E	195	213	Right-handed alpha
Helix 65	AH2	E	222	237	Right-handed alpha
Helix 66	AH3	E	238	247	Right-handed alpha
Helix 67	AH4	E	247	252	Right-handed alpha
Helix 68	AH5	E	254	269	Right-handed alpha
Helix 69	AH6	F	23	34	Right-handed alpha
Helix 70	AH7	F	47	60	Right-handed alpha
Helix 71	AH8	F	73	78	Right-handed alpha
Helix 72	AH9	F	93	101	Right-handed alpha
Helix 73	AI1	F	115	125	Right-handed alpha
Helix 74	AI2	F	164	169	Right-handed alpha
Helix 75	AI3	F	180	192	Right-handed alpha
Helix 76	AI4	F	195	213	Right-handed alpha
Helix 77	AI5	F	222	235	Right-handed alpha
Helix 78	AI6	F	238	248	Right-handed alpha
Helix 79	AI7	F	254	269	Right-handed alpha
Helix 80	AI8	G	383	400	Right-handed alpha
Helix 81	AI9	G	417	431	Right-handed alpha
Helix 82	AJ1	G	469	489	Right-handed alpha
Helix 83	AJ2	G	518	528	Right-handed alpha
Helix 84	AJ3	G	537	550	Right-handed alpha
Helix 85	AJ4	G	573	590	Right-handed alpha
Helix 86	AJ5	G	605	612	Right-handed alpha
Helix 87	AJ6	G	623	637	Right-handed alpha

There are 20 sheets in PDB entry 9QH8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	66	first strand
Strand 2	A	104	108	parallel
Strand 3	A	147	152	parallel
Strand 4	A	38	41	parallel
Strand 5	A	172	175	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	83	first strand
Strand 2	A	88	92	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	138	140	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	67	first strand
Strand 2	B	104	108	parallel
Strand 3	B	147	152	parallel
Strand 4	B	38	41	parallel
Strand 5	B	172	175	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	83	first strand
Strand 2	B	88	92	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	133	first strand
Strand 2	B	138	141	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	67	first strand
Strand 2	C	104	108	parallel
Strand 3	C	147	152	parallel
Strand 4	C	38	41	parallel
Strand 5	C	172	175	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	84	first strand
Strand 2	C	87	92	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	132	first strand
Strand 2	C	139	141	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	67	first strand
Strand 2	D	104	108	parallel
Strand 3	D	147	152	parallel
Strand 4	D	38	41	parallel
Strand 5	D	172	175	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	84	first strand
Strand 2	D	87	92	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	133	first strand
Strand 2	D	138	141	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	67	first strand
Strand 2	E	104	108	parallel
Strand 3	E	147	152	parallel
Strand 4	E	38	41	parallel
Strand 5	E	172	175	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	83	first strand
Strand 2	E	88	90	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	133	first strand
Strand 2	E	138	141	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	67	first strand
Strand 2	F	104	108	parallel
Strand 3	F	147	152	parallel
Strand 4	F	38	41	parallel
Strand 5	F	172	175	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	84	first strand
Strand 2	F	87	92	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	130	133	first strand
Strand 2	F	138	141	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	406	410	first strand
Strand 2	G	439	442	anti-parallel
Strand 3	G	415	416	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	507	512	first strand
Strand 2	G	491	497	anti-parallel
Strand 3	G	449	455	parallel
Strand 4	G	554	561	parallel
Strand 5	G	594	598	parallel
Strand 6	G	617	618	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QH8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QH8