Analysis of interatomic Contacts of Structural Units in PDB entry:
9QHH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QHH entry

There is 1 chain in PDB entry 9QHH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 237	ASN 3223

There are 92 helices in PDB entry 9QHH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	241	257	Right-handed alpha
Helix 2	AA2	A	263	283	Right-handed alpha
Helix 3	AA3	A	287	307	Right-handed alpha
Helix 4	AA4	A	325	340	Right-handed alpha
Helix 5	AA5	A	350	354	Right-handed 310
Helix 6	AA6	A	355	379	Right-handed alpha
Helix 7	AA7	A	384	398	Right-handed alpha
Helix 8	AA8	A	403	419	Right-handed alpha
Helix 9	AA9	A	422	452	Right-handed alpha
Helix 10	AB1	A	457	469	Right-handed alpha
Helix 11	AB2	A	472	502	Right-handed alpha
Helix 12	AB3	A	514	519	Right-handed alpha
Helix 13	AB4	A	524	530	Right-handed alpha
Helix 14	AB5	A	540	552	Right-handed alpha
Helix 15	AB6	A	565	575	Right-handed alpha
Helix 16	AB7	A	580	584	Right-handed 310
Helix 17	AB8	A	585	601	Right-handed alpha
Helix 18	AB9	A	614	629	Right-handed alpha
Helix 19	AC1	A	630	631	Right-handed 310
Helix 20	AC2	A	632	636	Right-handed 310
Helix 21	AC3	A	677	700	Right-handed alpha
Helix 22	AC4	A	718	732	Right-handed alpha
Helix 23	AC5	A	756	772	Right-handed alpha
Helix 24	AC6	A	773	778	Right-handed 310
Helix 25	AC7	A	785	787	Right-handed 310
Helix 26	AC8	A	837	841	Right-handed 310
Helix 27	AC9	A	842	846	Right-handed 310
Helix 28	AD1	A	864	877	Right-handed alpha
Helix 29	AD2	A	878	888	Right-handed alpha
Helix 30	AD3	A	892	909	Right-handed alpha
Helix 31	AD4	A	913	933	Right-handed alpha
Helix 32	AD5	A	952	966	Right-handed alpha
Helix 33	AD6	A	976	994	Right-handed alpha
Helix 34	AD7	A	1120	1139	Right-handed alpha
Helix 35	AD8	A	1151	1153	Right-handed 310
Helix 36	AD9	A	1158	1167	Right-handed alpha
Helix 37	AE1	A	1172	1184	Right-handed alpha
Helix 38	AE2	A	1200	1208	Right-handed alpha
Helix 39	AE3	A	1212	1229	Right-handed alpha
Helix 40	AE4	A	1237	1246	Right-handed alpha
Helix 41	AE5	A	1248	1252	Right-handed 310
Helix 42	AE6	A	1289	1312	Right-handed alpha
Helix 43	AE7	A	1315	1323	Right-handed alpha
Helix 44	AE8	A	1326	1332	Right-handed 310
Helix 45	AE9	A	1333	1347	Right-handed alpha
Helix 46	AF1	A	1351	1361	Right-handed alpha
Helix 47	AF2	A	1364	1375	Right-handed alpha
Helix 48	AF3	A	1379	1388	Right-handed alpha
Helix 49	AF4	A	1389	1391	Right-handed 310
Helix 50	AF5	A	1442	1460	Right-handed alpha
Helix 51	AF6	A	1476	1479	Right-handed 310
Helix 52	AF7	A	1480	1490	Right-handed alpha
Helix 53	AF8	A	1492	1515	Right-handed alpha
Helix 54	AF9	A	1521	1548	Right-handed alpha
Helix 55	AG1	A	1558	1568	Right-handed alpha
Helix 56	AG2	A	1606	1620	Right-handed alpha
Helix 57	AG3	A	1621	1629	Right-handed alpha
Helix 58	AG4	A	1634	1639	Right-handed alpha
Helix 59	AG5	A	1646	1654	Right-handed alpha
Helix 60	AG6	A	1668	1676	Right-handed alpha
Helix 61	AG7	A	1689	1695	Right-handed alpha
Helix 62	AG8	A	1719	1730	Right-handed alpha
Helix 63	AG9	A	1733	1747	Right-handed alpha
Helix 64	AH1	A	1757	1761	Right-handed 310
Helix 65	AH2	A	1769	1799	Right-handed alpha
Helix 66	AH3	A	1840	1857	Right-handed alpha
Helix 67	AH4	A	1864	1885	Right-handed alpha
Helix 68	AH5	A	1898	1920	Right-handed alpha
Helix 69	AH6	A	1928	1945	Right-handed alpha
Helix 70	AH7	A	1945	1961	Right-handed alpha
Helix 71	AH8	A	1964	1977	Right-handed alpha
Helix 72	AH9	A	1977	1982	Right-handed alpha
Helix 73	AI1	A	1985	2004	Right-handed alpha
Helix 74	AI2	A	2029	2038	Right-handed alpha
Helix 75	AI3	A	2041	2059	Right-handed alpha
Helix 76	AI4	A	2111	2120	Right-handed alpha
Helix 77	AI5	A	2127	2131	Right-handed 310
Helix 78	AI6	A	2222	2232	Right-handed alpha
Helix 79	AI7	A	2379	2383	Right-handed 310
Helix 80	AI8	A	2407	2412	Right-handed 310
Helix 81	AI9	A	2445	2452	Right-handed alpha
Helix 82	AJ1	A	2458	2470	Right-handed alpha
Helix 83	AJ2	A	2610	2617	Right-handed alpha
Helix 84	AJ3	A	2742	2748	Right-handed alpha
Helix 85	AJ4	A	2780	2788	Right-handed alpha
Helix 86	AJ5	A	2831	2844	Right-handed alpha
Helix 87	AJ6	A	2845	2849	Right-handed 310
Helix 88	AJ7	A	2850	2854	Right-handed 310
Helix 89	AJ8	A	2868	2884	Right-handed alpha
Helix 90	AJ9	A	3056	3070	Right-handed alpha
Helix 91	AK1	A	3072	3086	Right-handed alpha
Helix 92	AK2	A	3097	3102	Right-handed alpha

There are 30 sheets in PDB entry 9QHH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	311	first strand
Strand 2	A	643	645	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	510	first strand
Strand 2	A	344	349	parallel
Strand 3	A	315	319	parallel
Strand 4	A	553	556	parallel
Strand 5	A	662	673	anti-parallel
Strand 6	A	651	657	anti-parallel
Strand 7	A	789	790	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	562	first strand
Strand 2	A	811	812	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	935	936	first strand
Strand 2	A	1260	1261	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1145	1149	first strand
Strand 2	A	970	975	parallel
Strand 3	A	940	943	parallel
Strand 4	A	1188	1191	parallel
Strand 5	A	1274	1282	anti-parallel
Strand 6	A	1267	1271	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1196	1197	first strand
Strand 2	A	1403	1404	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1464	1466	first strand
Strand 2	A	1600	1604	anti-parallel
Strand 3	A	1592	1596	anti-parallel
Strand 4	A	1582	1586	anti-parallel
Strand 5	A	1573	1577	anti-parallel
Strand 6	A	1640	1643	anti-parallel
Strand 7	A	1553	1556	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1679	1682	first strand
Strand 2	A	1685	1688	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1697	1698	first strand
Strand 2	A	1717	1718	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1810	1812	first strand
Strand 2	A	1825	1827	anti-parallel
Strand 3	A	1834	1835	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1815	1817	first strand
Strand 2	A	1822	1823	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2062	2064	first strand
Strand 2	A	2069	2072	anti-parallel
Strand 3	A	2154	2157	parallel
Strand 4	A	2210	2214	parallel
Strand 5	A	2246	2249	parallel
Strand 6	A	2268	2270	parallel
Strand 7	A	2312	2314	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2091	2095	first strand
Strand 2	A	2079	2084	anti-parallel
Strand 3	A	2200	2204	parallel
Strand 4	A	2236	2240	parallel
Strand 5	A	2254	2259	parallel
Strand 6	A	2298	2306	parallel
Strand 7	A	2288	2295	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2098	2100	first strand
Strand 2	A	2162	2166	parallel
Strand 3	A	2195	2198	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2168	2172	first strand
Strand 2	A	2177	2181	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2280	2283	first strand
Strand 2	A	2321	2324	parallel
Strand 3	A	2339	2340	parallel
Strand 4	A	2360	2364	parallel
Strand 5	A	2401	2404	parallel

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There are 15 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2330	2333	first strand
Strand 2	A	2346	2351	parallel
Strand 3	A	2368	2374	parallel
Strand 4	A	2417	2419	parallel
Strand 5	A	2426	2432	anti-parallel
Strand 6	A	2435	2444	anti-parallel
Strand 7	A	2473	2480	parallel
Strand 8	A	2485	2489	anti-parallel
Strand 9	A	2494	2498	anti-parallel
Strand 10	A	2515	2519	parallel
Strand 11	A	2539	2543	parallel
Strand 12	A	2582	2589	parallel
Strand 13	A	2572	2577	anti-parallel
Strand 14	A	2562	2567	anti-parallel
Strand 15	A	2624	2628	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2505	2508	first strand
Strand 2	A	2525	2528	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2552	2554	first strand
Strand 2	A	2599	2603	parallel
Strand 3	A	2606	2609	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2637	2640	first strand
Strand 2	A	2659	2665	parallel
Strand 3	A	2709	2715	anti-parallel
Strand 4	A	2683	2686	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2649	2651	first strand
Strand 2	A	2720	2722	anti-parallel
Strand 3	A	2678	2680	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2702	2704	first strand
Strand 2	A	2672	2675	anti-parallel
Strand 3	A	2725	2728	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2731	2733	first strand
Strand 2	A	2751	2754	parallel
Strand 3	A	2810	2817	parallel
Strand 4	A	2796	2804	anti-parallel
Strand 5	A	2791	2793	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2738	2741	first strand
Strand 2	A	2762	2765	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2858	2860	first strand
Strand 2	A	2865	2867	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2909	2912	first strand
Strand 2	A	2972	2976	parallel
Strand 3	A	2957	2961	anti-parallel
Strand 4	A	2947	2951	anti-parallel
Strand 5	A	3043	3045	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2935	2938	first strand
Strand 2	A	2988	2995	parallel
Strand 3	A	3001	3009	anti-parallel
Strand 4	A	3012	3018	anti-parallel
Strand 5	A	3030	3033	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3104	3110	first strand
Strand 2	A	3151	3157	anti-parallel
Strand 3	A	3197	3202	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3122	3125	first strand
Strand 2	A	3182	3185	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3132	3135	first strand
Strand 2	A	3174	3177	anti-parallel
Strand 3	A	3163	3165	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QHH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QHH