Analysis of interatomic Contacts of Structural Units in PDB entry:
9QHJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QHJ entry

There are 4 chains in PDB entry 9QHJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 33VAL 295
B
 PHE 33VAL 295
C
 VAL 2GLY 263
D
 VAL 2GLY 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 9QHJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 46Right-handed alpha
Helix 2
AA2
A
46 61Right-handed alpha
Helix 3
AA3
A
69 90Right-handed alpha
Helix 4
AA4
A
94 120Right-handed alpha
Helix 5
AA5
A
121 126Right-handed alpha
Helix 6
AA6
A
128 133Right-handed alpha
Helix 7
AA7
A
136 166Right-handed alpha
Helix 8
AA8
A
171 175Right-handed 310
Helix 9
AA9
A
176 202Right-handed alpha
Helix 10
AB1
A
204 220Right-handed alpha
Helix 11
AB2
A
225 230Right-handed alpha
Helix 12
AB3
A
231 233Right-handed 310
Helix 13
AB4
A
235 240Right-handed alpha
Helix 14
AB5
A
243 258Right-handed alpha
Helix 15
AB6
A
262 288Right-handed alpha
Helix 16
AB7
A
290 295Right-handed alpha
Helix 17
AB8
B
34 46Right-handed alpha
Helix 18
AB9
B
46 61Right-handed alpha
Helix 19
AC1
B
69 90Right-handed alpha
Helix 20
AC2
B
94 120Right-handed alpha
Helix 21
AC3
B
121 126Right-handed alpha
Helix 22
AC4
B
128 133Right-handed alpha
Helix 23
AC5
B
136 166Right-handed alpha
Helix 24
AC6
B
171 175Right-handed 310
Helix 25
AC7
B
176 202Right-handed alpha
Helix 26
AC8
B
204 220Right-handed alpha
Helix 27
AC9
B
225 230Right-handed alpha
Helix 28
AD1
B
231 233Right-handed 310
Helix 29
AD2
B
235 240Right-handed alpha
Helix 30
AD3
B
243 258Right-handed alpha
Helix 31
AD4
B
262 288Right-handed alpha
Helix 32
AD5
B
290 295Right-handed alpha
Helix 33
AD6
C
72 79Right-handed alpha
Helix 34
AD7
C
110 122Right-handed alpha
Helix 35
AD8
C
125 141Right-handed alpha
Helix 36
AD9
C
144 148Right-handed 310
Helix 37
AE1
C
149 153Right-handed 310
Helix 38
AE2
C
154 168Right-handed alpha
Helix 39
AE3
C
179 183Right-handed 310
Helix 40
AE4
C
187 202Right-handed alpha
Helix 41
AE5
C
211 219Right-handed alpha
Helix 42
AE6
C
236 244Right-handed alpha
Helix 43
AE7
C
245 263Right-handed alpha
Helix 44
AE8
D
72 79Right-handed alpha
Helix 45
AE9
D
110 122Right-handed alpha
Helix 46
AF1
D
125 141Right-handed alpha
Helix 47
AF2
D
144 148Right-handed 310
Helix 48
AF3
D
149 153Right-handed 310
Helix 49
AF4
D
154 168Right-handed alpha
Helix 50
AF5
D
179 183Right-handed 310
Helix 51
AF6
D
187 202Right-handed alpha
Helix 52
AF7
D
211 219Right-handed alpha
Helix 53
AF8
D
236 244Right-handed alpha
Helix 54
AF9
D
245 263Right-handed alpha
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There are 6 sheets in PDB entry 9QHJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 55first strand
Strand 2
C
4 7anti-parallel
Strand 3
C
88 90anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 15first strand
Strand 2
C
43 51anti-parallel
Strand 3
C
34 37anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 98first strand
Strand 2
C
173 177parallel
Strand 3
C
205 208parallel
Strand 4
C
60 64parallel
Strand 5
C
221 226parallel
Strand 6
C
229 235anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 55first strand
Strand 2
D
4 7anti-parallel
Strand 3
D
88 90anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 15first strand
Strand 2
D
43 51anti-parallel
Strand 3
D
34 37anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
95 98first strand
Strand 2
D
173 177parallel
Strand 3
D
205 208parallel
Strand 4
D
60 64parallel
Strand 5
D
221 226parallel
Strand 6
D
229 235anti-parallel
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