Analysis of interatomic Contacts of Structural Units in PDB entry:
9QIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QIB entry

There are 2 chains in PDB entry 9QIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0PRO 341
B
 GLY 0PRO 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9QIB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 18Right-handed alpha
Helix 2
AA2
A
20 35Right-handed alpha
Helix 3
AA3
A
65 69Right-handed 310
Helix 4
AA4
A
80 87Right-handed 310
Helix 5
AA5
A
95 104Right-handed alpha
Helix 6
AA6
A
152 160Right-handed alpha
Helix 7
AA7
A
161 183Right-handed alpha
Helix 8
AA8
A
205 215Right-handed alpha
Helix 9
AA9
A
215 220Right-handed alpha
Helix 10
AB1
A
269 284Right-handed alpha
Helix 11
AB2
A
302 304Right-handed 310
Helix 12
AB3
A
321 338Right-handed alpha
Helix 13
AB4
B
5 18Right-handed alpha
Helix 14
AB5
B
20 35Right-handed alpha
Helix 15
AB6
B
65 69Right-handed 310
Helix 16
AB7
B
80 87Right-handed 310
Helix 17
AB8
B
95 104Right-handed alpha
Helix 18
AB9
B
152 160Right-handed alpha
Helix 19
AC1
B
161 183Right-handed alpha
Helix 20
AC2
B
205 215Right-handed alpha
Helix 21
AC3
B
215 220Right-handed alpha
Helix 22
AC4
B
269 284Right-handed alpha
Helix 23
AC5
B
302 304Right-handed 310
Helix 24
AC6
B
321 338Right-handed alpha
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There are 10 sheets in PDB entry 9QIB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
B
74 75anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 135first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
105 111anti-parallel
Strand 4
A
140 146anti-parallel
Strand 5
A
51 56anti-parallel
Strand 6
A
39 45anti-parallel
Strand 7
A
187 192parallel
Strand 8
A
195 200anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
B
2 3anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 228first strand
Strand 2
A
235 241anti-parallel
Strand 3
A
295 300anti-parallel
Strand 4
A
258 262parallel
Strand 5
A
265 267anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
292 293anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 307first strand
Strand 2
A
318 319anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 135first strand
Strand 2
B
118 123anti-parallel
Strand 3
B
105 111anti-parallel
Strand 4
B
140 146anti-parallel
Strand 5
B
51 56anti-parallel
Strand 6
B
39 45anti-parallel
Strand 7
B
187 192parallel
Strand 8
B
195 200anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 228first strand
Strand 2
B
235 241anti-parallel
Strand 3
B
295 300anti-parallel
Strand 4
B
258 262parallel
Strand 5
B
265 267anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 252first strand
Strand 2
B
292 293anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 307first strand
Strand 2
B
318 319anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il