Analysis of interatomic Contacts of Structural Units in PDB entry:
9QIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QIJ entry

There is 1 chain in PDB entry 9QIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3GLY 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9QIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 26Right-handed alpha
Helix 2
AA2
A
27 42Right-handed alpha
Helix 3
AA3
A
69 75Right-handed 310
Helix 4
AA4
A
102 110Right-handed alpha
Helix 5
AA5
A
159 166Right-handed alpha
Helix 6
AA6
A
168 187Right-handed alpha
Helix 7
AA7
A
211 221Right-handed alpha
Helix 8
AA8
A
221 226Right-handed alpha
Helix 9
AA9
A
269 284Right-handed alpha
Helix 10
AB1
A
318 336Right-handed alpha
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There are 3 sheets in PDB entry 9QIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
125 131anti-parallel
Strand 3
A
140 142anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
125 131anti-parallel
Strand 3
A
112 118anti-parallel
Strand 4
A
147 153anti-parallel
Strand 5
A
58 63anti-parallel
Strand 6
A
46 52anti-parallel
Strand 7
A
191 196parallel
Strand 8
A
204 205anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 235first strand
Strand 2
A
240 247anti-parallel
Strand 3
A
291 298anti-parallel
Strand 4
A
257 262parallel
Strand 5
A
266 267anti-parallel
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