Analysis of interatomic Contacts of Structural Units in PDB entry:
9QIP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QIP entry

There are 2 chains in PDB entry 9QIP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4522	PRO 4814
B	GLU 38	HIS 1049

There are 55 helices in PDB entry 9QIP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4522	4534	Right-handed alpha
Helix 2	AA2	A	4559	4565	Right-handed alpha
Helix 3	AA3	A	4571	4588	Right-handed alpha
Helix 4	AA4	A	4676	4680	Right-handed 310
Helix 5	AA5	A	4687	4699	Right-handed alpha
Helix 6	AA6	A	4704	4708	Right-handed 310
Helix 7	AA7	A	4717	4738	Right-handed alpha
Helix 8	AA8	A	4740	4746	Right-handed alpha
Helix 9	AA9	A	4748	4750	Right-handed 310
Helix 10	AB1	A	4751	4782	Right-handed alpha
Helix 11	AB2	A	4786	4811	Right-handed alpha
Helix 12	AB3	B	40	52	Right-handed alpha
Helix 13	AB4	B	52	60	Right-handed alpha
Helix 14	AB5	B	70	84	Right-handed alpha
Helix 15	AB6	B	97	103	Right-handed 310
Helix 16	AB7	B	108	115	Right-handed alpha
Helix 17	AB8	B	117	130	Right-handed alpha
Helix 18	AB9	B	148	154	Right-handed 310
Helix 19	AC1	B	163	177	Right-handed alpha
Helix 20	AC2	B	253	257	Right-handed 310
Helix 21	AC3	B	303	307	Right-handed 310
Helix 22	AC4	B	320	340	Right-handed alpha
Helix 23	AC5	B	347	365	Right-handed alpha
Helix 24	AC6	B	372	382	Right-handed alpha
Helix 25	AC7	B	387	406	Right-handed alpha
Helix 26	AC8	B	421	427	Right-handed alpha
Helix 27	AC9	B	432	436	Right-handed 310
Helix 28	AD1	B	443	451	Right-handed alpha
Helix 29	AD2	B	451	461	Right-handed alpha
Helix 30	AD3	B	469	483	Right-handed alpha
Helix 31	AD4	B	503	508	Right-handed 310
Helix 32	AD5	B	513	517	Right-handed 310
Helix 33	AD6	B	520	533	Right-handed alpha
Helix 34	AD7	B	546	552	Right-handed 310
Helix 35	AD8	B	554	561	Right-handed alpha
Helix 36	AD9	B	570	585	Right-handed alpha
Helix 37	AE1	B	610	614	Right-handed 310
Helix 38	AE2	B	623	629	Right-handed alpha
Helix 39	AE3	B	633	650	Right-handed alpha
Helix 40	AE4	B	650	663	Right-handed alpha
Helix 41	AE5	B	665	675	Right-handed alpha
Helix 42	AE6	B	681	691	Right-handed alpha
Helix 43	AE7	B	695	712	Right-handed alpha
Helix 44	AE8	B	712	722	Right-handed alpha
Helix 45	AE9	B	751	769	Right-handed alpha
Helix 46	AF1	B	774	778	Right-handed 310
Helix 47	AF2	B	779	789	Right-handed alpha
Helix 48	AF3	B	817	834	Right-handed alpha
Helix 49	AF4	B	857	873	Right-handed alpha
Helix 50	AF5	B	879	889	Right-handed alpha
Helix 51	AF6	B	894	914	Right-handed alpha
Helix 52	AF7	B	917	920	Right-handed 310
Helix 53	AF8	B	967	979	Right-handed alpha
Helix 54	AF9	B	1002	1007	Right-handed 310
Helix 55	AG1	B	1008	1014	Right-handed alpha

There are 9 sheets in PDB entry 9QIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4537	4539	first strand
Strand 2	A	4597	4601	parallel
Strand 3	A	4608	4614	anti-parallel
Strand 4	A	4625	4631	anti-parallel
Strand 5	A	4642	4645	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4543	4545	first strand
Strand 2	A	4551	4553	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	138	first strand
Strand 2	B	87	91	parallel
Strand 3	B	63	67	parallel
Strand 4	B	156	159	parallel
Strand 5	B	182	189	parallel
Strand 6	B	192	198	anti-parallel
Strand 7	B	416	417	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	295	297	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	262	first strand
Strand 2	B	244	250	anti-parallel
Strand 3	B	285	291	anti-parallel
Strand 4	B	215	221	anti-parallel
Strand 5	B	228	231	anti-parallel
Strand 6	B	270	272	anti-parallel
Strand 7	B	264	267	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	541	first strand
Strand 2	B	492	496	parallel
Strand 3	B	462	466	parallel
Strand 4	B	563	566	parallel
Strand 5	B	588	594	parallel
Strand 6	B	597	603	anti-parallel
Strand 7	B	922	927	anti-parallel
Strand 8	B	932	937	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	944	947	first strand
Strand 2	B	950	952	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	958	961	first strand
Strand 2	B	1043	1046	parallel
Strand 3	B	1021	1028	anti-parallel
Strand 4	B	985	988	anti-parallel
Strand 5	B	991	994	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	958	961	first strand
Strand 2	B	1043	1046	parallel
Strand 3	B	1021	1028	anti-parallel
Strand 4	B	1038	1039	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QIP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QIP