Analysis of interatomic Contacts of Structural Units in PDB entry:
9QJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QJ2 entry

There are 2 chains in PDB entry 9QJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10PRO 352
B
 LYS 8PRO 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 9QJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 16Right-handed 310
Helix 2
AA2
A
34 38Right-handed alpha
Helix 3
AA3
A
74 90Right-handed alpha
Helix 4
AA4
A
119 124Right-handed alpha
Helix 5
AA5
A
132 153Right-handed alpha
Helix 6
AA6
A
161 163Right-handed 310
Helix 7
AA7
A
198 202Right-handed 310
Helix 8
AA8
A
203 209Right-handed alpha
Helix 9
AA9
A
215 231Right-handed alpha
Helix 10
AB1
A
239 250Right-handed alpha
Helix 11
AB2
A
256 260Right-handed 310
Helix 12
AB3
A
263 274Right-handed alpha
Helix 13
AB4
A
277 281Right-handed 310
Helix 14
AB5
A
283 288Right-handed alpha
Helix 15
AB6
A
290 295Right-handed alpha
Helix 16
AB7
A
296 300Right-handed 310
Helix 17
AB8
A
307 318Right-handed alpha
Helix 18
AB9
A
319 323Right-handed 310
Helix 19
AC1
A
326 334Right-handed 310
Helix 20
AC2
B
8 16Right-handed 310
Helix 21
AC3
B
34 38Right-handed alpha
Helix 22
AC4
B
75 90Right-handed alpha
Helix 23
AC5
B
119 124Right-handed alpha
Helix 24
AC6
B
132 153Right-handed alpha
Helix 25
AC7
B
161 163Right-handed 310
Helix 26
AC8
B
198 202Right-handed 310
Helix 27
AC9
B
203 209Right-handed alpha
Helix 28
AD1
B
215 231Right-handed alpha
Helix 29
AD2
B
239 250Right-handed alpha
Helix 30
AD3
B
256 260Right-handed 310
Helix 31
AD4
B
263 274Right-handed alpha
Helix 32
AD5
B
277 281Right-handed 310
Helix 33
AD6
B
283 288Right-handed alpha
Helix 34
AD7
B
290 295Right-handed alpha
Helix 35
AD8
B
296 300Right-handed 310
Helix 36
AD9
B
307 318Right-handed alpha
Helix 37
AE1
B
319 323Right-handed 310
Helix 38
AE2
B
326 334Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 9QJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
98 104parallel
Strand 3
A
107 113anti-parallel
Strand 4
A
64 70anti-parallel
Strand 5
A
52 58anti-parallel
Strand 6
A
39 47anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
184 185anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 167first strand
Strand 2
A
175 177anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 196first strand
Strand 2
A
344 349anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
98 103parallel
Strand 3
B
107 113anti-parallel
Strand 4
B
64 71anti-parallel
Strand 5
B
51 58anti-parallel
Strand 6
B
39 47anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 156first strand
Strand 2
B
184 185anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 167first strand
Strand 2
B
175 177anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 196first strand
Strand 2
B
344 349anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il