Analysis of interatomic Contacts of Structural Units in PDB entry:
9QJC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QJC entry

There are 16 chains in PDB entry 9QJC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
5	ILE 213	LYS 866
6	LYS 175	LEU 692
C	SER 2	THR 347
D	SER 2	GLU 131
E	PRO 7	PHE 176
F	ALA 3	ASN 244
M	ASN 11	LYS 125
O	VAL 3	TYR 199
Q	HIS 15	SER 146
S	ALA 2	ARG 167
e	GLN 52	GLU 129
f	SER 4	ILE 107
z	MET 1	ILE 253
1	C 379	G 1443
2	A 0	G 16
B	LYS 282	LYS 404

There are149 helices in PDB entry 9QJC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	5	225	230	Right-handed 310
Helix 2	AA2	5	238	266	Right-handed alpha
Helix 3	AA3	5	267	281	Right-handed alpha
Helix 4	AA4	5	282	295	Right-handed alpha
Helix 5	AA5	5	301	313	Right-handed alpha
Helix 6	AA6	5	316	334	Right-handed alpha
Helix 7	AA7	5	343	347	Right-handed 310
Helix 8	AA8	5	355	384	Right-handed alpha
Helix 9	AA9	5	387	405	Right-handed alpha
Helix 10	AB1	5	408	418	Right-handed alpha
Helix 11	AB2	5	419	422	Right-handed 310
Helix 12	AB3	5	424	442	Right-handed alpha
Helix 13	AB4	5	445	459	Right-handed alpha
Helix 14	AB5	5	463	476	Right-handed alpha
Helix 15	AB6	5	483	503	Right-handed alpha
Helix 16	AB7	5	551	568	Right-handed alpha
Helix 17	AB8	5	575	589	Right-handed alpha
Helix 18	AB9	5	593	612	Right-handed alpha
Helix 19	AC1	5	615	626	Right-handed alpha
Helix 20	AC2	5	627	632	Right-handed 310
Helix 21	AC3	5	637	651	Right-handed alpha
Helix 22	AC4	5	654	670	Right-handed alpha
Helix 23	AC5	5	674	689	Right-handed alpha
Helix 24	AC6	5	690	691	Right-handed 310
Helix 25	AC7	5	692	695	Right-handed 310
Helix 26	AC8	5	696	701	Right-handed alpha
Helix 27	AC9	5	746	751	Right-handed alpha
Helix 28	AD1	5	754	767	Right-handed alpha
Helix 29	AD2	5	781	790	Right-handed alpha
Helix 30	AD3	5	847	849	Right-handed 310
Helix 31	AD4	5	850	860	Right-handed alpha
Helix 32	AD5	6	179	193	Right-handed alpha
Helix 33	AD6	6	195	211	Right-handed alpha
Helix 34	AD7	6	212	214	Right-handed 310
Helix 35	AD8	6	227	250	Right-handed alpha
Helix 36	AD9	6	264	287	Right-handed alpha
Helix 37	AE1	6	290	304	Right-handed alpha
Helix 38	AE2	6	304	309	Right-handed alpha
Helix 39	AE3	6	311	329	Right-handed alpha
Helix 40	AE4	6	331	349	Right-handed alpha
Helix 41	AE5	6	349	364	Right-handed alpha
Helix 42	AE6	6	376	389	Right-handed alpha
Helix 43	AE7	6	394	422	Right-handed alpha
Helix 44	AE8	6	428	436	Right-handed 310
Helix 45	AE9	6	438	456	Right-handed alpha
Helix 46	AF1	6	457	462	Right-handed alpha
Helix 47	AF2	6	466	470	Right-handed 310
Helix 48	AF3	6	471	484	Right-handed alpha
Helix 49	AF4	6	488	490	Right-handed 310
Helix 50	AF5	6	491	510	Right-handed alpha
Helix 51	AF6	6	515	521	Right-handed alpha
Helix 52	AF7	6	525	530	Right-handed alpha
Helix 53	AF8	6	550	554	Right-handed 310
Helix 54	AF9	6	556	577	Right-handed alpha
Helix 55	AG1	6	583	600	Right-handed alpha
Helix 56	AG2	6	604	629	Right-handed alpha
Helix 57	AG3	6	638	644	Right-handed alpha
Helix 58	AG4	6	650	653	Right-handed 310
Helix 59	AG5	6	654	690	Right-handed alpha
Helix 60	AG6	C	23	28	Right-handed 310
Helix 61	AG7	C	31	44	Right-handed alpha
Helix 62	AG8	C	114	129	Right-handed alpha
Helix 63	AG9	C	131	139	Right-handed alpha
Helix 64	AH1	C	153	159	Right-handed 310
Helix 65	AH2	C	161	173	Right-handed alpha
Helix 66	AH3	C	174	184	Right-handed alpha
Helix 67	AH4	C	190	195	Right-handed 310
Helix 68	AH5	C	214	219	Right-handed alpha
Helix 69	AH6	C	220	222	Right-handed 310
Helix 70	AH7	C	231	233	Right-handed 310
Helix 71	AH8	C	234	239	Right-handed alpha
Helix 72	AH9	C	240	243	Right-handed 310
Helix 73	AI1	C	252	263	Right-handed alpha
Helix 74	AI2	C	285	291	Right-handed alpha
Helix 75	AI3	C	292	297	Right-handed alpha
Helix 76	AI4	C	320	328	Right-handed alpha
Helix 77	AI5	C	330	338	Right-handed alpha
Helix 78	AI6	C	339	342	Right-handed 310
Helix 79	AI7	D	3	13	Right-handed alpha
Helix 80	AI8	D	66	70	Right-handed 310
Helix 81	AI9	D	72	76	Right-handed 310
Helix 82	AJ1	D	85	97	Right-handed alpha
Helix 83	AJ2	D	103	125	Right-handed alpha
Helix 84	AJ3	E	97	101	Right-handed 310
Helix 85	AJ4	E	102	107	Right-handed 310
Helix 86	AJ5	E	136	150	Right-handed alpha
Helix 87	AJ6	E	154	161	Right-handed alpha
Helix 88	AJ7	F	9	73	Right-handed alpha
Helix 89	AJ8	F	96	107	Right-handed alpha
Helix 90	AJ9	F	120	127	Right-handed alpha
Helix 91	AK1	F	128	129	Right-handed 310
Helix 92	AK2	F	130	133	Right-handed 310
Helix 93	AK3	F	140	151	Right-handed alpha
Helix 94	AK4	F	165	174	Right-handed alpha
Helix 95	AK5	F	175	177	Right-handed 310
Helix 96	AK6	F	182	190	Right-handed alpha
Helix 97	AK7	F	194	202	Right-handed alpha
Helix 98	AK8	F	222	226	Right-handed 310
Helix 99	AK9	F	235	244	Right-handed alpha
Helix 100	AL1	M	77	89	Right-handed alpha
Helix 101	AL2	M	89	96	Right-handed alpha
Helix 102	AL3	M	97	109	Right-handed alpha
Helix 103	AL4	M	110	112	Right-handed 310
Helix 104	AL5	M	113	124	Right-handed alpha
Helix 105	AL6	O	15	30	Right-handed alpha
Helix 106	AL7	O	37	40	Right-handed 310
Helix 107	AL8	O	46	56	Right-handed alpha
Helix 108	AL9	O	75	86	Right-handed alpha
Helix 109	AM1	O	92	100	Right-handed alpha
Helix 110	AM2	O	111	115	Right-handed 310
Helix 111	AM3	O	120	128	Right-handed 310
Helix 112	AM4	O	138	146	Right-handed alpha
Helix 113	AM5	O	149	184	Right-handed alpha
Helix 114	AM6	O	188	198	Right-handed alpha
Helix 115	AM7	Q	23	39	Right-handed alpha
Helix 116	AM8	Q	42	53	Right-handed alpha
Helix 117	AM9	Q	55	59	Right-handed 310
Helix 118	AN1	Q	64	72	Right-handed alpha
Helix 119	AN2	Q	107	117	Right-handed alpha
Helix 120	AN3	Q	123	131	Right-handed alpha
Helix 121	AN4	S	33	49	Right-handed alpha
Helix 122	AN5	S	98	115	Right-handed alpha
Helix 123	AN6	S	117	119	Right-handed 310
Helix 124	AN7	S	137	144	Right-handed alpha
Helix 125	AN8	e	54	58	Right-handed 310
Helix 126	AN9	e	78	83	Right-handed alpha
Helix 127	AO1	e	84	86	Right-handed 310
Helix 128	AO2	e	101	116	Right-handed alpha
Helix 129	AO3	f	37	42	Right-handed alpha
Helix 130	AO4	z	2	12	Right-handed alpha
Helix 131	AO5	z	14	30	Right-handed alpha
Helix 132	AO6	z	31	36	Right-handed alpha
Helix 133	AO7	z	38	55	Right-handed alpha
Helix 134	AO8	z	58	72	Right-handed alpha
Helix 135	AO9	z	73	76	Right-handed 310
Helix 136	AP1	z	78	85	Right-handed alpha
Helix 137	AP2	z	89	110	Right-handed alpha
Helix 138	AP3	z	111	113	Right-handed 310
Helix 139	AP4	z	117	139	Right-handed alpha
Helix 140	AP5	z	142	153	Right-handed alpha
Helix 141	AP6	z	167	186	Right-handed alpha
Helix 142	AP7	z	198	210	Right-handed alpha
Helix 143	AP8	z	214	227	Right-handed alpha
Helix 144	AP9	z	231	242	Right-handed alpha
Helix 145	AQ1	z	245	251	Right-handed alpha
Helix 146	AQ2	B	302	312	Right-handed alpha
Helix 147	AQ3	B	340	350	Right-handed alpha
Helix 148	AQ4	B	366	368	Right-handed 310
Helix 149	AQ5	B	383	403	Right-handed alpha

There are 23 sheets in PDB entry 9QJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	176	177	first strand
Strand 2	6	223	224	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	253	255	first strand
Strand 2	6	258	260	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	369	370	first strand
Strand 2	e	127	128	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	9	first strand
Strand 2	C	15	21	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	152	first strand
Strand 2	C	248	251	parallel
Strand 3	C	206	209	parallel
Strand 4	C	226	229	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	187	first strand
Strand 2	C	199	200	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	26	28	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	60	64	anti-parallel
Strand 3	D	78	81	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	80	first strand
Strand 2	E	62	66	anti-parallel
Strand 3	E	51	57	anti-parallel
Strand 4	E	39	42	anti-parallel
Strand 5	E	84	85	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	205	206	first strand
Strand 2	F	113	118	anti-parallel
Strand 3	F	83	87	anti-parallel
Strand 4	F	135	137	anti-parallel
Strand 5	F	230	233	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	156	first strand
Strand 2	F	159	162	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	14	16	first strand
Strand 2	S	149	151	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	53	59	first strand
Strand 2	M	43	48	anti-parallel
Strand 3	M	32	40	anti-parallel
Strand 4	M	19	23	anti-parallel
Strand 5	M	63	69	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	6	10	first strand
Strand 2	O	32	36	parallel
Strand 3	O	102	104	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	42	44	first strand
Strand 2	O	135	137	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	62	63	first strand
Strand 2	Q	80	88	parallel
Strand 3	Q	100	106	parallel
Strand 4	Q	120	122	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	62	63	first strand
Strand 2	Q	80	88	parallel
Strand 3	Q	137	139	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	27	31	first strand
Strand 2	S	5	10	anti-parallel
Strand 3	S	60	63	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	87	96	first strand
Strand 2	S	73	82	anti-parallel
Strand 3	S	121	128	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	72	76	first strand
Strand 2	e	92	96	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	8	16	first strand
Strand 2	f	27	32	anti-parallel
Strand 3	f	80	85	anti-parallel
Strand 4	f	67	75	anti-parallel
Strand 5	f	48	51	anti-parallel
Strand 6	f	97	101	anti-parallel
Strand 7	f	8	16	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	323	first strand
Strand 2	B	330	337	anti-parallel
Strand 3	B	291	295	anti-parallel
Strand 4	B	377	380	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	371	first strand
Strand 2	B	374	375	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QJC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QJC