Analysis of interatomic Contacts of Structural Units in PDB entry:
9QJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QJJ entry

There are 2 chains in PDB entry 9QJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 175LEU 432
B
 MET 1LEU 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9QJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
178 193Right-handed alpha
Helix 2
AA2
A
198 203Right-handed 310
Helix 3
AA3
A
207 225Right-handed alpha
Helix 4
AA4
A
228 244Right-handed alpha
Helix 5
AA5
A
249 251Right-handed 310
Helix 6
AA6
A
252 269Right-handed alpha
Helix 7
AA7
A
274 281Right-handed alpha
Helix 8
AA8
A
287 303Right-handed alpha
Helix 9
AA9
A
310 320Right-handed alpha
Helix 10
AB1
A
326 340Right-handed alpha
Helix 11
AB2
A
343 348Right-handed alpha
Helix 12
AB3
A
351 368Right-handed alpha
Helix 13
AB4
A
373 381Right-handed alpha
Helix 14
AB5
A
387 401Right-handed alpha
Helix 15
AB6
A
402 404Right-handed 310
Helix 16
AB7
A
407 413Right-handed alpha
Helix 17
AB8
A
414 419Right-handed 310
Helix 18
AB9
A
420 424Right-handed 310
Helix 19
AC1
B
45 56Right-handed alpha
Helix 20
AC2
B
87 94Right-handed alpha
Helix 21
AC3
B
100 121Right-handed alpha
Helix 22
AC4
B
129 131Right-handed 310
Helix 23
AC5
B
170 175Right-handed alpha
Helix 24
AC6
B
181 199Right-handed alpha
Helix 25
AC7
B
207 220Right-handed alpha
Helix 26
AC8
B
247 252Right-handed alpha
Helix 27
AC9
B
256 267Right-handed alpha
Helix 28
AD1
B
276 282Right-handed alpha
Helix 29
AD2
B
283 287Right-handed 310
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There are 3 sheets in PDB entry 9QJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 11first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
29 35anti-parallel
Strand 4
B
76 81anti-parallel
Strand 5
B
66 71anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
133 135anti-parallel
Strand 3
B
141 143anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
150 151anti-parallel
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