Analysis of interatomic Contacts of Structural Units in PDB entry:
9QJM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QJM entry

There are 2 chains in PDB entry 9QJM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 36	PHE 507
B	THR 36	ASN 113

There are 34 helices in PDB entry 9QJM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	61	Right-handed alpha
Helix 2	AA2	A	75	82	Right-handed alpha
Helix 3	AA3	A	82	101	Right-handed alpha
Helix 4	AA4	A	102	107	Right-handed alpha
Helix 5	AA5	A	117	143	Right-handed alpha
Helix 6	AA6	A	200	205	Right-handed alpha
Helix 7	AA7	A	220	234	Right-handed alpha
Helix 8	AA8	A	252	266	Right-handed alpha
Helix 9	AA9	A	321	326	Right-handed alpha
Helix 10	AB1	A	352	355	Right-handed 310
Helix 11	AB2	A	360	377	Right-handed alpha
Helix 12	AB3	A	383	387	Right-handed 310
Helix 13	AB4	A	403	411	Right-handed alpha
Helix 14	AB5	A	424	430	Right-handed alpha
Helix 15	AB6	A	457	471	Right-handed alpha
Helix 16	AB7	A	474	480	Right-handed alpha
Helix 17	AB8	A	488	502	Right-handed alpha
Helix 18	AB9	B	48	61	Right-handed alpha
Helix 19	AC1	B	75	82	Right-handed alpha
Helix 20	AC2	B	82	101	Right-handed alpha
Helix 21	AC3	B	102	107	Right-handed alpha
Helix 22	AC4	B	117	144	Right-handed alpha
Helix 23	AC5	B	200	205	Right-handed alpha
Helix 24	AC6	B	220	233	Right-handed alpha
Helix 25	AC7	B	252	266	Right-handed alpha
Helix 26	AC8	B	321	326	Right-handed alpha
Helix 27	AC9	B	352	355	Right-handed 310
Helix 28	AD1	B	360	377	Right-handed alpha
Helix 29	AD2	B	383	387	Right-handed 310
Helix 30	AD3	B	403	411	Right-handed alpha
Helix 31	AD4	B	424	430	Right-handed alpha
Helix 32	AD5	B	457	471	Right-handed alpha
Helix 33	AD6	B	474	480	Right-handed alpha
Helix 34	AD7	B	488	502	Right-handed alpha

There are 14 sheets in PDB entry 9QJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	149	first strand
Strand 2	A	65	69	parallel
Strand 3	A	37	45	parallel
Strand 4	A	169	179	parallel
Strand 5	A	159	163	anti-parallel
Strand 6	A	151	156	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	149	first strand
Strand 2	A	65	69	parallel
Strand 3	A	37	45	parallel
Strand 4	A	169	179	parallel
Strand 5	A	348	350	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	112	first strand
Strand 2	B	113	116	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	B	109	110	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	185	first strand
Strand 2	A	313	315	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	306	309	parallel
Strand 3	A	213	217	parallel
Strand 4	A	236	240	parallel
Strand 5	A	269	271	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	282	first strand
Strand 2	A	285	292	anti-parallel
Strand 3	A	299	304	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	391	first strand
Strand 2	A	396	401	anti-parallel
Strand 3	A	448	455	anti-parallel
Strand 4	A	436	442	anti-parallel
Strand 5	A	414	420	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	149	first strand
Strand 2	B	65	69	parallel
Strand 3	B	37	45	parallel
Strand 4	B	169	179	parallel
Strand 5	B	159	163	anti-parallel
Strand 6	B	151	156	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	149	first strand
Strand 2	B	65	69	parallel
Strand 3	B	37	45	parallel
Strand 4	B	169	179	parallel
Strand 5	B	348	350	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	185	first strand
Strand 2	B	313	315	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	306	309	parallel
Strand 3	B	213	217	parallel
Strand 4	B	236	240	parallel
Strand 5	B	269	271	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	282	first strand
Strand 2	B	285	292	anti-parallel
Strand 3	B	299	304	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	391	first strand
Strand 2	B	396	401	anti-parallel
Strand 3	B	448	455	anti-parallel
Strand 4	B	436	442	anti-parallel
Strand 5	B	414	420	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QJM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QJM